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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA07G435140
Query referenceTK1151
LocationChr07:110139521-110145076 (+)
DescriptionSimilar to LCB2a: Long chain base biosynthesis protein 2a (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_030831 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 14 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g23670 Serine palmitoyltransferase (SPT).
Characterization of an Arabidopsis cDNA encoding a subunit of serine palmitoyltransferase, the initial enzyme in sphingolipid biosynthesis.2001 · DOI: 10.1093/pcp/pce165
Loss-of-function mutations and inducible RNAi suppression of Arabidopsis LCB2 genes reveal the critical role of sphingolipids in gametophytic and sporophytic cell viability.2008 · DOI: 10.1111/j.1365-313x.2008.03420.x
MPK6, sphinganine and the LCB2a gene from serine palmitoyltransferase are required in the signaling pathway that mediates cell death induced by long chain bases in Arabidopsis.2011 · DOI: 10.1111/j.1469-8137.2011.03727.x
At3g48780 Serine palmitoyltransferase (SPT).
Loss-of-function mutations and inducible RNAi suppression of Arabidopsis LCB2 genes reveal the critical role of sphingolipids in gametophytic and sporophytic cell viability.2008 · DOI: 10.1111/j.1365-313x.2008.03420.x

Rice

Reference gene IDPossible functionPapers / DOI
Os11g0516000 Serine palmitoyltransferase (SPT). No verified direct reference in this release
Os01g0928800 Serine palmitoyltransferase (SPT). No verified direct reference in this release
Os01g0928700 Serine palmitoyltransferase (SPT). No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009555pollen developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.417; coverage=98.16; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009640photomorphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.417; coverage=98.16; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030148sphingolipid biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=84.232; coverage=98.569; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043067regulation of programmed cell deathBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.417; coverage=98.16; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046512sphingosine biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.417; coverage=98.16; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046513ceramide biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.417; coverage=98.16; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005773vacuoleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.417; coverage=98.16; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005783endoplasmic reticulumCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.417; coverage=98.16; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005789endoplasmic reticulum membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.417; coverage=98.16; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.417; coverage=98.16; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.417; coverage=98.16; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0017059serine palmitoyltransferase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.417; coverage=98.16; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004758serine C-palmitoyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.417; coverage=98.16; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030170pyridoxal phosphate bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.417; coverage=98.16; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G48780KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=84.232; coverage=98.569; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G23670KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=85.417; coverage=98.16; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0928700KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=77.062; coverage=101.636; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0928800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=83.745; coverage=99.387; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os11g0516000KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=83.678; coverage=98.978; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release