Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA07G410060`
Query reference	TK1151
Location	Chr07:103545921-103551226 (-)
Description	Similar to MSH2: DNA mismatch repair protein MSH2 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_030535 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 45 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g18524`	Component of the post-replicative DNA mismatch repair system (MMR).	Arabidopsis MutS homologs-AtMSH2, AtMSH3, AtMSH6, and a novel AtMSH7-form three distinct protein heterodimers with different specificities for mismatched DNA.2000 · DOI: 10.1105/tpc.12.6.991 Reduction of stability of arabidopsis genomic and transgenic DNA-repeat sequences (microsatellites) by inactivation of AtMSH2 mismatch-repair function.2003 · DOI: 10.1104/pp.103.023952 Dissimilar mispair-recognition spectra of Arabidopsis DNA-mismatch-repair proteins MSH2MSH6 (MutSalpha) and MSH2MSH7 (MutSgamma).2003 · DOI: 10.1093/nar/gkg780 The role of AtMSH2 in homologous recombination in Arabidopsis thaliana.2006 · DOI: 10.1038/sj.embor.7400577 The impact of sequence divergence and DNA mismatch repair on homeologous recombination in Arabidopsis.2006 · DOI: 10.1111/j.1365-313x.2006.02657.x Impact of the loss of AtMSH2 on double-strand break-induced recombination between highly diverged homeologous sequences in Arabidopsis thaliana germinal tissues.2007 · DOI: 10.1007/s11103-006-9128-5 Regulation of plant MSH2 and MSH6 genes in the UV-B-induced DNA damage response.2011 · DOI: 10.1093/jxb/err001

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006119	oxidative phosphorylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IMP:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006281	DNA repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IMP:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006290	pyrimidine dimer repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.746; coverage=100.644; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006298	mismatch repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.746; coverage=100.644; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006301	DNA damage tolerance	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IMP:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006302	double-strand break repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IMP:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006312	mitotic recombination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.746; coverage=100.644; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006974	DNA damage response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IMP:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007281	germ cell development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IMP:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008340	determination of adult lifespan	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IMP:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010165	response to X-ray	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IMP:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010224	response to UV-B	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IMP:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031573	mitotic intra-S DNA damage checkpoint signaling	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IGI:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043570	maintenance of DNA repeat elements	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045128	negative regulation of reciprocal meiotic recombination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.746; coverage=100.644; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045910	negative regulation of DNA recombination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IMP:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051053	negative regulation of DNA metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.585; coverage=101.396; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051726	regulation of cell cycle	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IMP:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.746; coverage=100.644; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005694	chromosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.5; coverage=98.818; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.746; coverage=100.644; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032301	MutSalpha complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.746; coverage=100.644; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032302	MutSbeta complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000287	magnesium ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000400	four-way junction DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IMP:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003682	chromatin binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003684	damaged DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.746; coverage=100.644; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003697	single-stranded DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.746; coverage=100.644; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008047	enzyme activator activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008094	ATP-dependent activity, acting on DNA	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016887	ATP hydrolysis activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IMP:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019237	centromeric DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IDA:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030983	mismatched DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.746; coverage=100.644; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032137	guanine/thymine mispair binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=ISO:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032142	single guanine insertion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032143	single thymine insertion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032181	dinucleotide repeat insertion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032357	oxidized purine DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032405	MutLalpha complex binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042803	protein homodimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043531	ADP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140664	ATP-dependent DNA damage sensor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.746; coverage=100.644; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G18524	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.746; coverage=100.644; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	bta:533115	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.454; coverage=98.926; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	mmu:17685	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=42.237; coverage=98.926; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	zma:100279876	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=67.585; coverage=101.396; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release