Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA06G480110 |
|---|---|
| Query reference | TK1151 |
| Location | Chr06:118978829-118986010 (+) |
| Description | Similar to MSH6: DNA mismatch repair protein MSH6 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_022524 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 35 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g02070 |
Component of the post-replicative DNA mismatch repair system (MMR). |
Arabidopsis MutS homologs-AtMSH2, AtMSH3, AtMSH6, and a novel AtMSH7-form three distinct protein heterodimers with different specificities for mismatched DNA.2000 · DOI: 10.1105/tpc.12.6.991
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000710 | meiotic mismatch repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.944; coverage=102.428; evalue=7.91e-152; UniProt GO evidence=ISS:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006290 | pyrimidine dimer repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.863; coverage=99.007; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006298 | mismatch repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.863; coverage=99.007; evalue=0.0; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007095 | mitotic G2 DNA damage checkpoint signaling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.409; coverage=102.649; evalue=1.1e-152; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007283 | spermatogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008340 | determination of adult lifespan | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009411 | response to UV | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032876 | negative regulation of DNA endoreduplication | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.409; coverage=102.649; evalue=1.1e-152; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045910 | negative regulation of DNA recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.863; coverage=99.007; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032301 | MutSalpha complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000287 | magnesium ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000400 | four-way junction DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003684 | damaged DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.863; coverage=99.007; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003690 | double-stranded DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.863; coverage=99.007; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.863; coverage=99.007; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008094 | ATP-dependent activity, acting on DNA | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016887 | ATP hydrolysis activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.202; coverage=100.773; evalue=1.01e-117; UniProt GO evidence=ISS:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019899 | enzyme binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030983 | mismatched DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.863; coverage=99.007; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032137 | guanine/thymine mispair binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032142 | single guanine insertion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032143 | single thymine insertion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032357 | oxidized purine DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032405 | MutLalpha complex binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043531 | ADP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140003 | histone H3K36me3 reader activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140664 | ATP-dependent DNA damage sensor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.863; coverage=99.007; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G02070 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=58.863; coverage=99.007; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dme:Dmel_CG7003 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.202; coverage=100.773; evalue=1.01e-117 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:2956 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.944; coverage=102.428; evalue=7.91e-152 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:17688 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.924; coverage=101.766; evalue=4.16e-156 | UniProtKB/Swiss-Prot DAT 2026 current_release |