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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA06G047330
Query referenceTK1151
LocationChr06:12810214-12817864 (+)
DescriptionSimilar to FTSHI5: Probable inactive ATP-dependent zinc metalloprotease FTSHI 5%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_025652 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 26 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g04340 Required for plastid development during embryogenesis.
FtsHi4 is essential for embryogenesis due to its influence on chloroplast development in Arabidopsis.2014 · DOI: 10.1371/journal.pone.0099741
At5g42270 Part of a complex that function as an ATP-dependent zinc metallopeptidase.
The VAR1 locus of Arabidopsis encodes a chloroplastic FtsH and is responsible for leaf variegation in the mutant alleles.2002 · DOI: 10.1046/j.1365-2443.2002.00558.x
Coordinated regulation and complex formation of yellow variegated1 and yellow variegated2, chloroplastic FtsH metalloproteases involved in the repair cycle of photosystem II in Arabidopsis thylakoid membranes.2003 · DOI: 10.1105/tpc.017319

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006508proteolysisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.388; coverage=94.595; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009658chloroplast organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.388; coverage=94.595; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010304PSII associated light-harvesting complex II catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.599; coverage=39.691; evalue=5.59e-49; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019684photosynthesis, light reactionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.599; coverage=39.691; evalue=5.59e-49; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030163protein catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.808; coverage=40.154; evalue=2.9e-52; UniProt GO evidence=IEA:UniProtKB-UniRuleUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045037protein import into chloroplast stromaBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.388; coverage=94.595; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045454cell redox homeostasisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.388; coverage=94.595; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051301cell divisionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.599; coverage=39.691; evalue=5.59e-49; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080093regulation of photorespirationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.388; coverage=94.595; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.388; coverage=94.595; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.505; coverage=38.996; evalue=5.36e-51; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009506plasmodesmaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.388; coverage=94.595; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.388; coverage=94.595; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009535chloroplast thylakoid membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.388; coverage=94.595; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009706chloroplast inner membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.388; coverage=94.595; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009941chloroplast envelopeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.388; coverage=94.595; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031969chloroplast membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.599; coverage=39.691; evalue=5.59e-49; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0062091Ycf2/FtsHi complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.388; coverage=94.595; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.599; coverage=39.691; evalue=5.59e-49; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004176ATP-dependent peptidase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.388; coverage=94.595; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004222metalloendopeptidase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.388; coverage=94.595; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.388; coverage=94.595; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.808; coverage=40.154; evalue=2.9e-52; UniProt GO evidence=IEA:UniProtKB-UniRuleUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016464chloroplast protein-transporting ATPase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.388; coverage=94.595; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016887ATP hydrolysis activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.388; coverage=94.595; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.599; coverage=39.691; evalue=5.59e-49; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G04340KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.388; coverage=94.595; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGpml:ATP_00273KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.505; coverage=38.996; evalue=5.36e-51UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsfu:Sfum_3197KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.632; coverage=39.073; evalue=9.33e-51UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsyn:slr1604KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.808; coverage=40.154; evalue=2.9e-52UniProtKB/Swiss-Prot DAT 2026 current_release