Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA06G019920 |
|---|---|
| Query reference | TK1151 |
| Location | Chr06:5436017-5441948 (-) |
| Description | Similar to At5g11010: Polynucleotide 5'-hydroxyl-kinase NOL9 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_031386 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 15 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g04680 |
Required for endonucleolytic cleavage during polyadenylation-dependent pre-mRNA 3'-end formation (By similarity). | |
At5g39930 |
Required for endonucleolytic cleavage during polyadenylation-dependent pre-mRNA 3'-end formation. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000448 | cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.174; coverage=98.396; evalue=1.07e-141; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000460 | maturation of 5.8S rRNA | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.732; coverage=109.626; evalue=2.64e-39; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006364 | rRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.174; coverage=98.396; evalue=1.07e-141; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.174; coverage=98.396; evalue=1.07e-141; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.357; coverage=104.813; evalue=8.5e-35; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.174; coverage=98.396; evalue=1.07e-141; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.357; coverage=104.813; evalue=8.5e-35; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045111 | intermediate filament cytoskeleton | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.57; coverage=99.465; evalue=4.72e-36; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0120330 | rixosome complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.57; coverage=99.465; evalue=4.72e-36; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.25; coverage=98.396; evalue=1.82e-41; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.174; coverage=98.396; evalue=1.07e-141; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046404 | ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.732; coverage=109.626; evalue=2.64e-39; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051731 | polynucleotide 5'-hydroxyl-kinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.174; coverage=98.396; evalue=1.07e-141; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051734 | ATP-dependent polynucleotide 5'-hydroxyl-kinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.25; coverage=98.396; evalue=1.82e-41; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051736 | ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.732; coverage=109.626; evalue=2.64e-39; UniProt GO evidence=IEA:RHEA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G11010 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.174; coverage=98.396; evalue=1.07e-141 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:523474 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.732; coverage=109.626; evalue=2.64e-39 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dre:567715 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=31.25; coverage=98.396; evalue=1.82e-41 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:79707 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.357; coverage=104.813; evalue=8.5e-35 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:74035 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.57; coverage=99.465; evalue=4.72e-36 | UniProtKB/Swiss-Prot DAT 2026 current_release |