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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA05G299650
Query referenceTK1151
LocationChr05:73893153-73897325 (+)
DescriptionSimilar to PPF-1: Inner membrane protein PPF-1%2C chloroplastic (Pisum sativum OX%3D3888)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_000537 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 15 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g24490 Required for the insertion of some light harvesting chlorophyll-binding proteins (LHCP) into the chloroplast thylakoid membrane.
Alb4 of Arabidopsis promotes assembly and stabilization of a non chlorophyll-binding photosynthetic complex, the CF1CF0-ATP synthase.2009 · DOI: 10.1093/mp/ssp095
Genetic and Physical Interaction Studies Reveal Functional Similarities between ALBINO3 and ALBINO4 in Arabidopsis.2015 · DOI: 10.1104/pp.15.00376
Suppressors of the Chloroplast Protein Import Mutant <i>tic40</i> Reveal a Genetic Link between Protein Import and Thylakoid Biogenesis.2017 · DOI: 10.1105/tpc.16.00962
At2g28800 Required for the insertion of some light harvesting chlorophyll-binding proteins (LHCP) into the chloroplast thylakoid membrane.
ALBINO3, an Arabidopsis nuclear gene essential for chloroplast differentiation, encodes a chloroplast protein that shows homology to proteins present in bacterial membranes and yeast mitochondria.1997 · DOI: 10.1105/tpc.9.5.717

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009658chloroplast organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.833; coverage=64.143; evalue=9.29e-143; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010027thylakoid membrane organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.644; coverage=95.1; evalue=0.0; UniProt GO evidence=IEA:TreeGrafterUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045038protein import into chloroplast thylakoid membraneBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.931; coverage=89.755; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051205protein insertion into membraneBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.644; coverage=95.1; evalue=0.0; UniProt GO evidence=IEA:TreeGrafterUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070208protein heterotrimerizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.931; coverage=89.755; evalue=0.0; UniProt GO evidence=IMP:CAFAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0072598protein localization to chloroplastBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.644; coverage=95.1; evalue=0.0; UniProt GO evidence=IEA:TreeGrafterUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005777peroxisomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.931; coverage=89.755; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.931; coverage=89.755; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009534chloroplast thylakoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.931; coverage=89.755; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009535chloroplast thylakoid membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.644; coverage=95.1; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009579thylakoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.833; coverage=64.143; evalue=9.29e-143; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032991protein-containing complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.931; coverage=89.755; evalue=0.0; UniProt GO evidence=IMP:CAFAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015450protein-transporting ATPase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.931; coverage=89.755; evalue=0.0; UniProt GO evidence=IDA:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019904protein domain specific bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.931; coverage=89.755; evalue=0.0; UniProt GO evidence=IPI:CAFAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032977membrane insertase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.644; coverage=95.1; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G24490KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=70.833; coverage=64.143; evalue=9.29e-143UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G28800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.931; coverage=89.755; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release