Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA04G454350`
Query reference	TK1151
Location	Chr04:114538432-114544827 (-)
Description	Similar to ALD1: Aminotransferase ALD1%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_038670 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 16 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g13810`	Aminotransferase involved in local and systemic acquired resistance (SAR) to the bacterial pathogen P.syringae.	Divergent roles in Arabidopsis thaliana development and defense of two homologous genes, aberrant growth and death2 and AGD2-LIKE DEFENSE RESPONSE PROTEIN1, encoding novel aminotransferases.2004 · DOI: 10.1105/tpc.019372 A key role for ALD1 in activation of local and systemic defenses in Arabidopsis.2004 · DOI: 10.1111/j.1365-313x.2004.02200.x Arabidopsis proteins important for modulating defense responses to Pseudomonas syringae that secrete HopW1-1.2008 · DOI: 10.1111/j.1365-313x.2008.03439.x A lesion-mimic syntaxin double mutant in Arabidopsis reveals novel complexity of pathogen defense signaling.2008 · DOI: 10.1093/mp/ssn011 Suppression of edr2-mediated powdery mildew resistance, cell death and ethylene-induced senescence by mutations in ALD1 in Arabidopsis.2011 · DOI: 10.1016/j.jgg.2011.03.001 Pipecolic acid, an endogenous mediator of defense amplification and priming, is a critical regulator of inducible plant immunity.2012 · DOI: 10.1105/tpc.112.103564 ALD1 Regulates Basal Immune Components and Early Inducible Defense Responses in Arabidopsis.2015 · DOI: 10.1094/mpmi-06-14-0187-r Characterization of a Pipecolic Acid Biosynthesis Pathway Required for Systemic Acquired Resistance.2016 · DOI: 10.1105/tpc.16.00486
`At4g33680`	Required for lysine biosynthesis.	An LL-diaminopimelate aminotransferase defines a novel variant of the lysine biosynthesis pathway in plants.2006 · DOI: 10.1104/pp.105.072629

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0299900`	Required for lysine biosynthesis.	No verified direct reference in this release
`Os03g0195100`	Probable aminotransferase that may generate amino-acid-derived defense signals and be involved in resistance to pathogens.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0009089	L-lysine biosynthetic process via diaminopimelate	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.148; coverage=95.07; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniPathway	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009627	systemic acquired resistance	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.63; coverage=95.07; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.63; coverage=95.07; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010150	leaf senescence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.63; coverage=95.07; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0033362	L-lysine biosynthetic process via diaminopimelate, diaminopimelate-aminotransferase pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.827; coverage=95.07; evalue=4.9e-160; UniProt GO evidence=IEA:UniProtKB-UniRule	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042742	defense response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.63; coverage=95.07; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0062034	L-pipecolic acid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.63; coverage=95.07; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=66.914; coverage=95.07; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.63; coverage=95.07; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009536	plastid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.63; coverage=95.07; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009570	chloroplast stroma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=66.914; coverage=95.07; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005507	copper ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=66.914; coverage=95.07; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008483	transaminase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.63; coverage=95.07; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010285	L,L-diaminopimelate aminotransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.148; coverage=95.07; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030170	pyridoxal phosphate binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.63; coverage=95.07; evalue=0.0; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0062045	L-lysine alpha-aminotransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.63; coverage=95.07; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G13810	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=69.63; coverage=95.07; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G33680	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=66.914; coverage=95.07; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0195100	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=66.422; coverage=95.775; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0299900	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.148; coverage=95.07; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release