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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA04G351470
Query referenceTK1151
LocationChr04:88719068-88721762 (+)
DescriptionSimilar to TPS1: Alpha%2Calpha-trehalose-phosphate synthase [UDP-forming] 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_037795 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 15 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g78580 Required for normal embryo development, vegetative growth and transition to flowering.
Trehalose metabolism in Arabidopsis: occurrence of trehalose and molecular cloning and characterization of trehalose-6-phosphate synthase homologues.2001 · DOI: 10.1093/jexbot/52.362.1817
Trehalose-6-phosphate synthase 1, which catalyses the first step in trehalose synthesis, is essential for Arabidopsis embryo maturation.2002 · DOI: 10.1046/j.1365-313x.2002.01220.x
Truncation of Arabidopsis thaliana and Selaginella lepidophylla trehalose-6-phosphate synthase unlocks high catalytic activity and supports high trehalose levels on expression in yeast.2002 · DOI: 10.1042/bj20020517
Trehalose 6-phosphate is indispensable for carbohydrate utilization and growth in Arabidopsis thaliana.2003 · DOI: 10.1073/pnas.1132018100
Arabidopsis trehalose-6-phosphate synthase 1 is essential for normal vegetative growth and transition to flowering.2004 · DOI: 10.1104/pp.104.039743
Trehalose metabolism and glucose sensing in plants.2005 · DOI: 10.1042/bst0330276
The role of trehalose-6-phosphate synthase in Arabidopsis embryo development.2005 · DOI: 10.1042/bst0330280
Delayed embryo development in the ARABIDOPSIS TREHALOSE-6-PHOSPHATE SYNTHASE 1 mutant is associated with altered cell wall structure, decreased cell division and starch accumulation.2006 · DOI: 10.1111/j.1365-313x.2006.02662.x
Isolation and molecular characterization of the Arabidopsis TPS1 gene, encoding trehalose-6-phosphate synthase.1998 · DOI: 10.1046/j.1365-313x.1998.00063.x
At4g27550 Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 4. No verified direct reference in this release
At1g16980 Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 2. No verified direct reference in this release
At1g17000 Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 3. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0005991trehalose metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.108; coverage=101.95; evalue=0.0; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005992trehalose biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.108; coverage=101.95; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009793embryo development ending in seed dormancyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.108; coverage=101.95; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009832plant-type cell wall biogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.108; coverage=101.95; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010182sugar mediated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.108; coverage=101.95; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048364root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.108; coverage=101.95; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048574long-day photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.108; coverage=101.95; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051301cell divisionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.108; coverage=101.95; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080186developmental vegetative growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.108; coverage=101.95; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.108; coverage=101.95; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=65.608; coverage=78.44; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.688; coverage=90.899; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005773vacuoleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.108; coverage=101.95; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.108; coverage=101.95; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003825alpha,alpha-trehalose-phosphate synthase (UDP-forming) activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.108; coverage=101.95; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G16980KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=65.608; coverage=78.44; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G17000KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=57.688; coverage=90.899; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G78580KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=78.108; coverage=101.95; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G27550KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.937; coverage=79.198; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release