RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene IDTkA04G263740
Query referenceTK1151
LocationChr04:66700022-66702445 (-)
DescriptionSimilar to Ubiquitin-conjugating enzyme E2-17 kDa (Solanum lycopersicum OX%3D4081)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_037242 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 12 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g64230 Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. No verified direct reference in this release
At5g53300 Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. No verified direct reference in this release
At5g41700 Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.
Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis.2005 · DOI: 10.1104/pp.105.067983
At4g27960 Accepts the ubiquitin-like protein SUMO/SMT3 from the E1 complex and catalyzes its covalent attachment to other proteins. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000209protein polyubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=91.892; coverage=61.667; evalue=4.72e-102; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006511ubiquitin-dependent protein catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=91.892; coverage=61.667; evalue=4.72e-102; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009960endosperm developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=91.216; coverage=61.667; evalue=2.02e-101; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016925protein sumoylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=90.541; coverage=61.667; evalue=6.98e-101; UniProt GO evidence=IEA:UniProtKB-UniPathwayUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=91.892; coverage=61.667; evalue=4.72e-102; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=91.216; coverage=61.667; evalue=2.02e-101; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=91.216; coverage=61.667; evalue=1.29e-101; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=91.216; coverage=61.667; evalue=1.29e-101; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004842ubiquitin-protein transferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=91.216; coverage=61.667; evalue=1.29e-101; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=91.892; coverage=61.667; evalue=4.72e-102; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031625ubiquitin protein ligase bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=91.216; coverage=61.667; evalue=2.09e-101; UniProt GO evidence=IPI:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061631ubiquitin conjugating enzyme activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=91.892; coverage=61.667; evalue=4.72e-102; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G64230KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=91.216; coverage=61.667; evalue=1.29e-101UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G27960KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=90.541; coverage=61.667; evalue=6.98e-101UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G41700KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=91.216; coverage=61.667; evalue=2.02e-101UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G53300KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=91.216; coverage=61.667; evalue=2.09e-101UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsly:100301932KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=91.892; coverage=61.667; evalue=4.72e-102UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsly:101249087KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=91.892; coverage=61.667; evalue=4.72e-102UniProtKB/Swiss-Prot DAT 2026 current_release