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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA04G228680
Query referenceTK1151
LocationChr04:58139313-58146093 (+)
DescriptionSimilar to HUA1: Zinc finger CCCH domain-containing protein 37 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_039364 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 10 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g12680 Involved in flower development.
HUA1, a regulator of stamen and carpel identities in Arabidopsis, codes for a nuclear RNA binding protein.2001 · DOI: 10.1105/tpc.010201
Two RNA binding proteins, HEN4 and HUA1, act in the processing of AGAMOUS pre-mRNA in Arabidopsis thaliana.2003 · DOI: 10.1016/s1534-5807(02)00399-4
At5g63260 Zinc finger CCCH domain-containing protein 67. No verified direct reference in this release
At2g47850 Zinc finger CCCH domain-containing protein 32. No verified direct reference in this release
At3g02830 Zinc finger CCCH domain-containing protein 33. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0616400 Zinc finger CCCH domain-containing protein 8. No verified direct reference in this release
Os06g0520600 Zinc finger CCCH domain-containing protein 43. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0001709cell fate determinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.049; coverage=97.628; evalue=1.42e-175; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006397mRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.049; coverage=97.628; evalue=1.42e-175; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009908flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.049; coverage=97.628; evalue=1.42e-175; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.049; coverage=97.628; evalue=1.42e-175; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016607nuclear speckCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.049; coverage=97.628; evalue=1.42e-175; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.049; coverage=97.628; evalue=1.42e-175; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.049; coverage=97.628; evalue=1.42e-175; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.049; coverage=97.628; evalue=1.42e-175; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004518nuclease activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.954; coverage=65.02; evalue=1.61e-55; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.049; coverage=97.628; evalue=1.42e-175; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G12680KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.049; coverage=97.628; evalue=1.42e-175UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G16540KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.954; coverage=65.02; evalue=1.61e-55UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0616400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.055; coverage=86.561; evalue=1.18e-141UniProtKB/Swiss-Prot DAT 2026 current_release