RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene IDTkA02G609290
Query referenceTK1151
LocationChr02:157147285-157150791 (+)
DescriptionSimilar to sigA: RNA polymerase sigma factor SigA (Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX%3D103690)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_027684 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 4 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g24120 Essential protein.
AtSig5 is an essential nucleus-encoded Arabidopsis sigma-like factor.2003 · DOI: 10.1104/pp.102.017913
Blue light-induced transcription of plastid-encoded psbD gene is mediated by a nuclear-encoded transcription initiation factor, AtSig5.2004 · DOI: 10.1073/pnas.0308362101
Light induction of Arabidopsis SIG1 and SIG5 transcripts in mature leaves: differential roles of cryptochrome 1 and cryptochrome 2 and dual function of SIG5 in the recognition of plastid promoters.2008 · DOI: 10.1111/j.1365-313x.2008.03567.x
ANK6, a mitochondrial ankyrin repeat protein, is required for male-female gamete recognition in Arabidopsis thaliana.2010 · DOI: 10.1073/pnas.1015911107

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006352DNA-templated transcription initiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.719; coverage=57.388; evalue=1.16e-80; UniProt GO evidence=IEA:UniProtKB-UniRuleUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.719; coverage=57.388; evalue=1.16e-80; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.719; coverage=57.388; evalue=1.16e-80; UniProt GO evidence=IEA:UniProtKB-UniRuleUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016987sigma factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.719; coverage=57.388; evalue=1.16e-80; UniProt GO evidence=IEA:UniProtKB-UniRuleUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGana:all5263KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.719; coverage=57.388; evalue=1.16e-80UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmsb:LJ00_13680KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.234; coverage=52.921; evalue=1.71e-66UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmsg:MSMEI_2684KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.234; coverage=52.921; evalue=1.71e-66UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmsm:MSMEG_2752KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.234; coverage=52.921; evalue=1.71e-66UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsyf:Synpcc7942_0649KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.81; coverage=52.577; evalue=1.47e-76UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsyf:Synpcc7942_0672KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.472; coverage=51.375; evalue=9.19e-71UniProtKB/Swiss-Prot DAT 2026 current_release