Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA02G348360`
Query reference	TK1151
Location	Chr02:88514630-88516289 (+)
Description	Similar to BZIP50: bZIP transcription factor 50 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_015292 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 16 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g42990`	Transcription factor involved in the unfolded protein response (UPR).	An Arabidopsis transcription factor, AtbZIP60, regulates the endoplasmic reticulum stress response in a manner unique to plants.2005 · DOI: 10.1073/pnas.0408941102 Endoplasmic reticulum stress activates the expression of a sub-group of protein disulfide isomerase genes and AtbZIP60 modulates the response in Arabidopsis thaliana.2008 · DOI: 10.1007/s00438-008-0356-z Arabidopsis bZIP60 is a proteolysis-activated transcription factor involved in the endoplasmic reticulum stress response.2008 · DOI: 10.1105/tpc.108.061002 Heat induces the splicing by IRE1 of a mRNA encoding a transcription factor involved in the unfolded protein response in Arabidopsis.2011 · DOI: 10.1073/pnas.1102117108 IRE1/bZIP60-mediated unfolded protein response plays distinct roles in plant immunity and abiotic stress responses.2012 · DOI: 10.1371/journal.pone.0031944

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0622700`	Transcription factor involved in endoplasmic reticulum (ER) stress response.	Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm.2011 · DOI: 10.1111/j.1365-313x.2010.04453.x Signal transduction by IRE1-mediated splicing of bZIP50 and other stress sensors in the endoplasmic reticulum stress response of rice.2012 · DOI: 10.1111/j.1365-313x.2011.04844.x Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses.2012 · DOI: 10.1093/mp/ssr115

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0002376	immune system process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.761; coverage=60.927; evalue=2.08e-16; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.712; coverage=68.874; evalue=5.24e-44; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.667; coverage=49.669; evalue=4.17e-08; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006986	response to unfolded protein	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.712; coverage=68.874; evalue=5.24e-44; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030968	endoplasmic reticulum unfolded protein response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.761; coverage=60.927; evalue=2.08e-16; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0034976	response to endoplasmic reticulum stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.712; coverage=68.874; evalue=5.24e-44; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042538	hyperosmotic salinity response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.667; coverage=49.669; evalue=4.17e-08; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.667; coverage=49.669; evalue=4.17e-08; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000139	Golgi membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.667; coverage=49.669; evalue=4.17e-08; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.712; coverage=68.874; evalue=5.24e-44; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005783	endoplasmic reticulum	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.667; coverage=49.669; evalue=4.17e-08; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005789	endoplasmic reticulum membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.712; coverage=68.874; evalue=5.24e-44; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.667; coverage=49.669; evalue=4.17e-08; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.712; coverage=68.874; evalue=5.24e-44; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.712; coverage=68.874; evalue=5.24e-44; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.761; coverage=60.927; evalue=2.08e-16; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G42990	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.761; coverage=60.927; evalue=2.08e-16	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G40950	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.667; coverage=49.669; evalue=4.17e-08	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os06g0622700	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.712; coverage=68.874; evalue=5.24e-44	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os07g0644100	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.373; coverage=19.536; evalue=2.4e-06	UniProtKB/Swiss-Prot DAT 2026 current_release