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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA02G186330
Query referenceTK1151
LocationChr02:47891061-47893260 (+)
DescriptionSimilar to VPS35B: Vacuolar protein sorting-associated protein 35B (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_016131 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 13 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g75850 Plays a role in vesicular protein sorting.
Arabidopsis VPS35, a retromer component, is required for vacuolar protein sorting and involved in plant growth and leaf senescence.2008 · DOI: 10.1093/pcp/pcn006
At2g17790 Plays a role in vesicular protein sorting.
Loss-of-function mutations of retromer large subunit genes suppress the phenotype of an Arabidopsis zig mutant that lacks Qb-SNARE VTI11.2010 · DOI: 10.1105/tpc.109.069294
At3g51310 Plays a role in vesicular protein sorting. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006886intracellular protein transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.448; coverage=38.965; evalue=6.95e-39; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042147retrograde transport, endosome to GolgiBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.448; coverage=38.965; evalue=6.95e-39; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.5; coverage=54.496; evalue=1.17e-35; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=41.15; coverage=61.58; evalue=3.53e-37; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005770late endosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.448; coverage=38.965; evalue=6.95e-39; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005771multivesicular bodyCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.5; coverage=54.496; evalue=1.17e-35; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005794Golgi apparatusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.448; coverage=38.965; evalue=6.95e-39; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.448; coverage=38.965; evalue=6.95e-39; UniProt GO evidence=IEA:GOCUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009536plastidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=78.846; coverage=14.169; evalue=6.83e-16; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010008endosome membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.448; coverage=38.965; evalue=6.95e-39; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.5; coverage=54.496; evalue=1.17e-35; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030904retromer complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.448; coverage=38.965; evalue=6.95e-39; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030906retromer, cargo-selective complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.448; coverage=38.965; evalue=6.95e-39; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G75850KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.448; coverage=38.965; evalue=6.95e-39UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G17790KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=41.15; coverage=61.58; evalue=3.53e-37UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G51310KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.5; coverage=54.496; evalue=1.17e-35UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G50530KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=78.846; coverage=14.169; evalue=6.83e-16UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G50640KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=78.846; coverage=14.169; evalue=6.83e-16UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G63490KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=82.692; coverage=14.169; evalue=6.2e-17UniProtKB/Swiss-Prot DAT 2026 current_release