Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA02G130890 |
|---|---|
| Query reference | TK1151 |
| Location | Chr02:33880649-33882952 (+) |
| Description | Similar to PUB1: Probable ubiquitin conjugation factor E4 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_006562 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 20 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g15400 |
Ubiquitin-protein ligase that may function as an E3 ligase in conjunction with specific E1 and E2 ligases. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000209 | protein polyubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.183; coverage=87.382; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006457 | protein folding | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.174; coverage=71.931; evalue=7.35e-116; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.183; coverage=87.382; evalue=0.0; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006513 | protein monoubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.174; coverage=71.931; evalue=7.35e-116; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009411 | response to UV | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.174; coverage=71.931; evalue=7.35e-116; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.183; coverage=87.382; evalue=0.0; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030163 | protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.174; coverage=71.931; evalue=7.35e-116; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034976 | response to endoplasmic reticulum stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.174; coverage=71.931; evalue=7.35e-116; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036503 | ERAD pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.183; coverage=87.382; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.174; coverage=71.931; evalue=7.35e-116; UniProt GO evidence=ISO:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051865 | protein autoubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.174; coverage=71.931; evalue=7.35e-116; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000151 | ubiquitin ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.183; coverage=87.382; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.183; coverage=87.382; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.183; coverage=87.382; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.174; coverage=71.931; evalue=7.35e-116; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019899 | enzyme binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.174; coverage=71.931; evalue=7.35e-116; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034450 | ubiquitin-ubiquitin ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.183; coverage=87.382; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051082 | unfolded protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.174; coverage=71.931; evalue=7.35e-116; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051117 | ATPase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.174; coverage=71.931; evalue=7.35e-116; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.183; coverage=87.382; evalue=0.0; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G15400 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.183; coverage=87.382; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:10277 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.055; coverage=71.931; evalue=6.11e-114 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:9354 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.212; coverage=88.927; evalue=4.42e-106 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:63958 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.174; coverage=71.931; evalue=7.35e-116 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2542023 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=28.659; coverage=83.863; evalue=6.54e-112 | UniProtKB/Swiss-Prot DAT 2026 current_release |