Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA02G032080 |
|---|---|
| Query reference | TK1151 |
| Location | Chr02:7776144-7782307 (+) |
| Description | Similar to rhp16: ATP-dependent helicase rhp16 (Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX%3D284812) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_017552 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 23 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g50410 |
Probable helicase-like transcription factor involved in transcriptional gene silencing. | |
At5g43530 |
Possesses intrinsic ATP-dependent nucleosome-remodeling activity. | |
At5g22750 |
Functions in error-free postreplication DNA repair or DNA- damage tolerance (DTT) pathway. |
A homolog of ScRAD5 is involved in DNA repair and homologous recombination in Arabidopsis.2008 · DOI: 10.1104/pp.108.116806 RAD5A, RECQ4A, and MUS81 have specific functions in homologous recombination and define different pathways of DNA repair in Arabidopsis thaliana.2010 · DOI: 10.1105/tpc.110.078568
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000715 | nucleotide-excision repair, DNA damage recognition | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.242; coverage=55.681; evalue=1.09e-141; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000720 | pyrimidine dimer repair by nucleotide-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.663; coverage=100.112; evalue=2.5e-94; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006289 | nucleotide-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.663; coverage=100.112; evalue=2.5e-94; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.242; coverage=55.681; evalue=1.09e-141; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008104 | intracellular protein localization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.242; coverage=55.681; evalue=1.09e-141; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009411 | response to UV | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.242; coverage=55.681; evalue=1.09e-141; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034644 | cellular response to UV | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.242; coverage=55.681; evalue=1.09e-141; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070911 | global genome nucleotide-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.242; coverage=55.681; evalue=1.09e-141; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080188 | gene silencing by siRNA-directed DNA methylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.663; coverage=100.112; evalue=2.5e-94; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000113 | nucleotide-excision repair factor 4 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=IPI:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=HDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031463 | Cul3-RING ubiquitin ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.242; coverage=55.681; evalue=1.09e-141; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=IC:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004386 | helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=ISM:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008094 | ATP-dependent activity, acting on DNA | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=ISM:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016787 | hydrolase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.242; coverage=55.681; evalue=1.09e-141; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016887 | ATP hydrolysis activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=IC:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=ISM:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140658 | ATP-dependent chromatin remodeler activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153; UniProt GO evidence=NAS:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G20010 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.663; coverage=100.112; evalue=2.5e-94 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | sce:YBR114W | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.242; coverage=55.681; evalue=1.09e-141 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2538860 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.465; coverage=55.456; evalue=1.36e-153 | UniProtKB/Swiss-Prot DAT 2026 current_release |