Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA01G608560 |
|---|---|
| Query reference | TK1151 |
| Location | Chr01:153396068-153402030 (+) |
| Description | Similar to GAF1: Protein GAMETOPHYTE DEFECTIVE 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_000494 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 17 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g59980 |
Probable component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends (By similarity). |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0001682 | tRNA 5'-leader removal | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.186; coverage=31.103; evalue=1.61e-36; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006364 | rRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.925; coverage=62.749; evalue=3.35e-143; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006396 | RNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.442; coverage=31.103; evalue=1.49e-34; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008033 | tRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.925; coverage=62.749; evalue=3.35e-143; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009553 | embryo sac development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.925; coverage=62.749; evalue=3.35e-143; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048868 | pollen tube development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.925; coverage=62.749; evalue=3.35e-143; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000172 | ribonuclease MRP complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.186; coverage=31.103; evalue=1.61e-36; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.925; coverage=62.749; evalue=3.35e-143; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.442; coverage=31.103; evalue=1.49e-34; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005655 | nucleolar ribonuclease P complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.925; coverage=62.749; evalue=3.35e-143; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.925; coverage=62.749; evalue=3.35e-143; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030681 | multimeric ribonuclease P complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.442; coverage=31.103; evalue=1.78e-35; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000049 | tRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.422; coverage=46.293; evalue=8.06e-30; UniProt GO evidence=IDA:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.925; coverage=62.749; evalue=3.35e-143; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004526 | ribonuclease P activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.186; coverage=31.103; evalue=1.61e-36; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016787 | hydrolase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.925; coverage=62.749; evalue=3.35e-143; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033204 | ribonuclease P RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.186; coverage=31.103; evalue=1.61e-36; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G59980 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.925; coverage=62.749; evalue=3.35e-143 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:615098 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=44.186; coverage=31.103; evalue=1.61e-36 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0269980 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.422; coverage=46.293; evalue=8.06e-30 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:10556 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.442; coverage=31.103; evalue=1.49e-34 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:54364 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.442; coverage=31.103; evalue=1.78e-35 | UniProtKB/Swiss-Prot DAT 2026 current_release |