Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA01G600560`
Query reference	TK1151
Location	Chr01:151281102-151284220 (-)
Description	Similar to PBL9: Probable serine/threonine-protein kinase PBL9 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_000595 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 28 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g28930`	Possible bi-functional kinase.	Light-induced stomatal opening is affected by the guard cell protein kinase APK1b.2014 · DOI: 10.1371/journal.pone.0097161
`At1g07570`	Possible bi-functional kinase.	Novel protein kinase of Arabidopsis thaliana (APK1) that phosphorylates tyrosine, serine and threonine.1992 · DOI: 10.1007/bf00046450
`At5g02290`	May play a role in the regulation of plant growth and development (Probable).	No verified direct reference in this release
`At2g39660`	Plays a central role in immune responses.	The membrane-anchored BOTRYTIS-INDUCED KINASE1 plays distinct roles in Arabidopsis resistance to necrotrophic and biotrophic pathogens.2006 · DOI: 10.1105/tpc.105.035576 Phosphorylation of receptor-like cytoplasmic kinases by bacterial flagellin.2010 · DOI: 10.4161/psb.11500 Receptor-like cytoplasmic kinases integrate signaling from multiple plant immune receptors and are targeted by a Pseudomonas syringae effector.2010 · DOI: 10.1016/j.chom.2010.03.007 A Xanthomonas uridine 5'-monophosphate transferase inhibits plant immune kinases.2012 · DOI: 10.1038/nature10962 BIK1 interacts with PEPRs to mediate ethylene-induced immunity.2013 · DOI: 10.1073/pnas.1215543110 Inverse modulation of plant immune and brassinosteroid signaling pathways by the receptor-like cytoplasmic kinase BIK1.2013 · DOI: 10.1073/pnas.1302154110 Identification and functional analysis of phosphorylation residues of the Arabidopsis BOTRYTIS-INDUCED KINASE1.2013 · DOI: 10.1007/s13238-013-3053-6 The FLS2-associated kinase BIK1 directly phosphorylates the NADPH oxidase RbohD to control plant immunity.2014 · DOI: 10.1016/j.chom.2014.02.009 Microbe-associated molecular pattern-induced calcium signaling requires the receptor-like cytoplasmic kinases, PBL1 and BIK1.2014 · DOI: 10.1186/s12870-014-0374-4 Regulatory role of BOTRYTIS INDUCED KINASE1 in ETHYLENE INSENSITIVE3-dependent gene expression in Arabidopsis.2015 · DOI: 10.1007/s00299-015-1812-y The Decoy Substrate of a Pathogen Effector and a Pseudokinase Specify Pathogen-Induced Modified-Self Recognition and Immunity in Plants.2015 · DOI: 10.1016/j.chom.2015.08.004 The MAP4 Kinase SIK1 Ensures Robust Extracellular ROS Burst and Antibacterial Immunity in Plants.2018 · DOI: 10.1016/j.chom.2018.08.007 Ligand-induced monoubiquitination of BIK1 regulates plant immunity.2020 · DOI: 10.1038/s41586-020-2210-3 The calcium-permeable channel OSCA1.3 regulates plant stomatal immunity.2020 · DOI: 10.1038/s41586-020-2702-1 The Arabidopsis MIK2 receptor elicits immunity by sensing a conserved signature from phytocytokines and microbes.2021 · DOI: 10.1038/s41467-021-25580-w

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0110900`	Functions downstream of CERK1 in the microbial peptidoglycans (PGNs) and fungal chitin signaling pathways that mediate innate immunity.	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity.2014 · DOI: 10.1111/tpj.12710

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0002221	pattern recognition receptor signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.116; coverage=96.8; evalue=6.08e-174; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0002237	response to molecule of bacterial origin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.116; coverage=96.8; evalue=6.08e-174; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006468	protein phosphorylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.116; coverage=96.8; evalue=6.08e-174; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006952	defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.19; coverage=95.2; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009620	response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.116; coverage=96.8; evalue=6.08e-174; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010119	regulation of stomatal movement	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.116; coverage=96.8; evalue=6.08e-174; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042742	defense response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.116; coverage=96.8; evalue=6.08e-174; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045087	innate immune response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.858; coverage=97.6; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046777	protein autophosphorylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.116; coverage=96.8; evalue=6.08e-174; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050832	defense response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.116; coverage=96.8; evalue=6.08e-174; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080141	regulation of jasmonic acid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.116; coverage=96.8; evalue=6.08e-174; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080142	regulation of salicylic acid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.116; coverage=96.8; evalue=6.08e-174; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900424	regulation of defense response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.116; coverage=96.8; evalue=6.08e-174; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902458	positive regulation of stomatal opening	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.247; coverage=94.933; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.116; coverage=96.8; evalue=6.08e-174; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005730	nucleolus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.116; coverage=96.8; evalue=6.08e-174; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.116; coverage=96.8; evalue=6.08e-174; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.19; coverage=95.2; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005768	endosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.116; coverage=96.8; evalue=6.08e-174; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005794	Golgi apparatus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.116; coverage=96.8; evalue=6.08e-174; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.19; coverage=95.2; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010008	endosome membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.116; coverage=96.8; evalue=6.08e-174; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0012505	endomembrane system	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.116; coverage=96.8; evalue=6.08e-174; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004674	protein serine/threonine kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.19; coverage=95.2; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004713	protein tyrosine kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.19; coverage=95.2; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.19; coverage=95.2; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016301	kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.116; coverage=96.8; evalue=6.08e-174; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0106310	protein serine kinase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.19; coverage=95.2; evalue=0.0; UniProt GO evidence=IEA:RHEA	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G07570	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.19; coverage=95.2; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G28930	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.247; coverage=94.933; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G39660	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=66.116; coverage=96.8; evalue=6.08e-174	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G02290	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=68.524; coverage=95.733; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os05g0110900	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.858; coverage=97.6; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4337593	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.858; coverage=97.6; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release