Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA01G598960`
Query reference	TK1151
Location	Chr01:150867908-150869269 (+)
Description	Similar to MYB119: Transcription factor MYB119 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_000620 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 27 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58850`	Transcription factor required for female gametophyte fertility.	MYB64 and MYB119 are required for cellularization and differentiation during female gametogenesis in Arabidopsis thaliana.2013 · DOI: 10.1371/journal.pgen.1003783
`At5g11050`	Transcription factor required for female gametophyte fertility.	MYB64 and MYB119 are required for cellularization and differentiation during female gametogenesis in Arabidopsis thaliana.2013 · DOI: 10.1371/journal.pgen.1003783
`At4g18770`	Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules.	MYB98 is required for pollen tube guidance and synergid cell differentiation in Arabidopsis.2005 · DOI: 10.1105/tpc.105.034603 Genome-wide expression profiling of the Arabidopsis female gametophyte identifies families of small, secreted proteins.2007 · DOI: 10.1371/journal.pgen.0030171 Cytoplasmic Ca2+ changes dynamically during the interaction of the pollen tube with synergid cells.2012 · DOI: 10.1242/dev.081208
`At3g27785`	Transcription activator that recognizes the motif 5'-TAACGG-3' in the promoter of endosperm-induced genes.	Overexpression of PGA37/MYB118 and MYB115 promotes vegetative-to-embryonic transition in Arabidopsis.2009 · DOI: 10.1038/cr.2008.276 Involvement of an R2R3-MYB transcription factor gene AtMYB118 in embryogenesis in Arabidopsis.2009 · DOI: 10.1007/s00299-008-0644-4 MYB118 represses endosperm maturation in seeds of Arabidopsis.2014 · DOI: 10.1105/tpc.114.130021 Transcriptional Activation of Two Delta-9 Palmitoyl-ACP Desaturase Genes by MYB115 and MYB118 Is Critical for Biosynthesis of Omega-7 Monounsaturated Fatty Acids in the Endosperm of Arabidopsis Seeds.2016 · DOI: 10.1105/tpc.16.00612

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0841500`	Transcription factor involved in abiotic stress responses.	Overexpression of an R1R2R3 MYB gene, OsMYB3R-2, increases tolerance to freezing, drought, and salt stress in transgenic Arabidopsis.2007 · DOI: 10.1104/pp.106.094532 Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes.2009 · DOI: 10.1104/pp.108.133454

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.236; coverage=80.5; evalue=1.39e-65; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.236; coverage=80.5; evalue=1.39e-65; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009553	embryo sac development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.143; coverage=35.0; evalue=1.76e-52; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009960	endosperm development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.294; coverage=34.0; evalue=3.32e-48; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010183	pollen tube guidance	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.143; coverage=35.0; evalue=1.76e-52; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010228	vegetative to reproductive phase transition of meristem	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.294; coverage=34.0; evalue=3.32e-48; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010262	somatic embryogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.294; coverage=34.0; evalue=3.32e-48; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010439	regulation of glucosinolate biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.294; coverage=34.0; evalue=3.32e-48; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045691	regulation of embryo sac central cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.143; coverage=35.0; evalue=1.76e-52; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045697	regulation of synergid differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.143; coverage=35.0; evalue=1.76e-52; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045723	positive regulation of fatty acid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.294; coverage=34.0; evalue=3.32e-48; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.294; coverage=34.0; evalue=3.32e-48; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045995	regulation of embryonic development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.294; coverage=34.0; evalue=3.32e-48; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051302	regulation of cell division	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.741; coverage=81.0; evalue=6.52e-61; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0055089	fatty acid homeostasis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.294; coverage=34.0; evalue=3.32e-48; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1904095	negative regulation of endosperm development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.294; coverage=34.0; evalue=3.32e-48; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000014	regulation of endosperm development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.294; coverage=34.0; evalue=3.32e-48; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000034	regulation of seed maturation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.294; coverage=34.0; evalue=3.32e-48; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000692	negative regulation of seed maturation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.294; coverage=34.0; evalue=3.32e-48; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2001280	positive regulation of unsaturated fatty acid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.294; coverage=34.0; evalue=3.32e-48; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.236; coverage=80.5; evalue=1.39e-65; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.143; coverage=35.0; evalue=1.76e-52; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.236; coverage=80.5; evalue=1.39e-65; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.236; coverage=80.5; evalue=1.39e-65; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.143; coverage=35.0; evalue=1.76e-52; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.236; coverage=80.5; evalue=1.39e-65; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.143; coverage=35.0; evalue=1.76e-52; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G27785	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=60.294; coverage=34.0; evalue=3.32e-48	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G18770	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.143; coverage=35.0; evalue=1.76e-52	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G11050	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.741; coverage=81.0; evalue=6.52e-61	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G40360	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=44.262; coverage=45.75; evalue=7.52e-43	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G58850	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.236; coverage=80.5; evalue=1.39e-65	UniProtKB/Swiss-Prot DAT 2026 current_release