Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA01G558460`
Query reference	TK1151
Location	Chr01:140474832-140476778 (+)
Description	Similar to GAF1: Zinc finger protein GAI-ASSOCIATED FACTOR 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_001131 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 21 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g50700`	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling.	No verified direct reference in this release
`At1g03840`	Transcription factor that regulates tissue boundaries and asymmetric cell division.	DELLA protein functions as a transcriptional activator through the DNA binding of the indeterminate domain family proteins.2014 · DOI: 10.1073/pnas.1321669111
`At5g44160`	Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3'.	Modulation of sugar metabolism by an INDETERMINATE DOMAIN transcription factor contributes to photoperiodic flowering in Arabidopsis.2011 · DOI: 10.1111/j.1365-313x.2010.04432.x AKIN10 delays flowering by inactivating IDD8 transcription factor through protein phosphorylation in Arabidopsis.2015 · DOI: 10.1186/s12870-015-0503-8
`At5g66730`	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation.	The Arabidopsis C2H2 zinc finger INDETERMINATE DOMAIN1/ENHYDROUS promotes the transition to germination by regulating light and hormonal signaling during seed maturation.2011 · DOI: 10.1105/tpc.111.085134 DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.2014 · DOI: 10.1105/tpc.114.125690
`At1g55110`	Probable transcription factor.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0002221	pattern recognition receptor signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.844; coverage=65.283; evalue=2.41e-101; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.693; coverage=66.415; evalue=2.52e-110; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.693; coverage=66.415; evalue=2.52e-110; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008356	asymmetric cell division	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.0; coverage=37.736; evalue=1.16e-108; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009740	gibberellic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.693; coverage=66.415; evalue=2.52e-110; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009937	regulation of gibberellic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.693; coverage=66.415; evalue=2.52e-110; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009939	positive regulation of gibberellic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.0; coverage=37.736; evalue=1.16e-108; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010029	regulation of seed germination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=76.289; coverage=36.604; evalue=1.48e-104; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010075	regulation of meristem growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.0; coverage=37.736; evalue=1.16e-108; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010336	gibberellic acid homeostasis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.693; coverage=66.415; evalue=2.52e-110; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010431	seed maturation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=76.289; coverage=36.604; evalue=1.48e-104; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0034504	protein localization to nucleus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.0; coverage=37.736; evalue=1.16e-108; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.0; coverage=37.736; evalue=1.16e-108; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048364	root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.0; coverage=37.736; evalue=1.16e-108; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.693; coverage=66.415; evalue=2.52e-110; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.882; coverage=31.887; evalue=3.37e-102; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.0; coverage=37.736; evalue=1.16e-108; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.693; coverage=66.415; evalue=2.52e-110; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.693; coverage=66.415; evalue=2.52e-110; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.693; coverage=66.415; evalue=2.52e-110; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.0; coverage=37.736; evalue=1.16e-108; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G03840	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=76.0; coverage=37.736; evalue=1.16e-108	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G14580	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=79.882; coverage=31.887; evalue=3.37e-102	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G02080	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.844; coverage=65.283; evalue=2.41e-101	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G50700	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=53.693; coverage=66.415; evalue=2.52e-110	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G66730	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=76.289; coverage=36.604; evalue=1.48e-104	UniProtKB/Swiss-Prot DAT 2026 current_release