Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA01G089990`
Query reference	TK1151
Location	Chr01:22866506-22870958 (-)
Description	Similar to PP2CA: Protein phosphatase 2C 37 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_032882 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 28 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g11410`	Major negative regulator of abscisic acid (ABA) responses during seed germination and cold acclimation.	Antisense inhibition of protein phosphatase 2C accelerates cold acclimation in Arabidopsis thaliana.2001 · DOI: 10.1046/j.1365-313x.2001.01048.x Physical and functional interaction of the Arabidopsis K(+) channel AKT2 and phosphatase AtPP2CA.2002 · DOI: 10.1105/tpc.000943 ABA-hypersensitive germination3 encodes a protein phosphatase 2C (AtPP2CA) that strongly regulates abscisic acid signaling during germination among Arabidopsis protein phosphatase 2Cs.2006 · DOI: 10.1104/pp.105.070128 The protein phosphatase AtPP2CA negatively regulates abscisic acid signal transduction in Arabidopsis, and effects of abh1 on AtPP2CA mRNA.2006 · DOI: 10.1104/pp.105.070318 ABA-Hypersensitive Germination1 encodes a protein phosphatase 2C, an essential component of abscisic acid signaling in Arabidopsis seed.2007 · DOI: 10.1111/j.1365-313x.2007.03107.x ABI1 and PP2CA phosphatases are negative regulators of Snf1-related protein kinase1 signaling in Arabidopsis.2013 · DOI: 10.1105/tpc.113.114066
`At1g07430`	Involved in the negative regulation of the K(+) potassium channel AKT1 by its dephosphorylation, antagonistically to CIPK proteins (e.g. CIPK23).	No verified direct reference in this release
`At5g59220`	Acts as a negative regulator of abscisic acid (ABA) signaling for stomatal closure in leaves, and controls water loss during leaf senescence.	An ABA-regulated and Golgi-localized protein phosphatase controls water loss during leaf senescence in Arabidopsis.2012 · DOI: 10.1111/j.1365-313x.2011.04821.x An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves.2012 · DOI: 10.1104/pp.111.190876 Selective inhibition of clade A phosphatases type 2C by PYR/PYL/RCAR abscisic acid receptors.2012 · DOI: 10.1104/pp.111.188623 Unique drought resistance functions of the highly ABA-induced clade A protein phosphatase 2Cs.2012 · DOI: 10.1104/pp.112.202408
`At2g29380`	Probable protein phosphatase 2C 24.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0457200`	Probable protein phosphatase 2C 49.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0009409	response to cold	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.295; coverage=85.315; evalue=3.21e-41; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009414	response to water deprivation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.295; coverage=85.315; evalue=3.21e-41; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009658	chloroplast organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.264; coverage=60.839; evalue=5.88e-35; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.295; coverage=85.315; evalue=3.21e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009738	abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.295; coverage=85.315; evalue=3.21e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009788	negative regulation of abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.295; coverage=85.315; evalue=3.21e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009939	positive regulation of gibberellic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.713; coverage=60.839; evalue=2.47e-39; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010030	positive regulation of seed germination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.713; coverage=60.839; evalue=2.47e-39; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010118	stomatal movement	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.264; coverage=60.839; evalue=5.88e-35; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010119	regulation of stomatal movement	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.295; coverage=85.315; evalue=3.21e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010150	leaf senescence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.264; coverage=60.839; evalue=5.88e-35; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010360	negative regulation of anion channel activity	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.295; coverage=85.315; evalue=3.21e-41; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048838	release of seed from dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.713; coverage=60.839; evalue=2.47e-39; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051607	defense response to virus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.295; coverage=85.315; evalue=3.21e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902039	negative regulation of seed dormancy process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.713; coverage=60.839; evalue=2.47e-39; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902531	regulation of intracellular signal transduction	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.295; coverage=85.315; evalue=3.21e-41; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.295; coverage=85.315; evalue=3.21e-41; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005794	Golgi apparatus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.264; coverage=60.839; evalue=5.88e-35; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.295; coverage=85.315; evalue=3.21e-41; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.713; coverage=60.839; evalue=2.47e-39; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.713; coverage=60.839; evalue=2.47e-39; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0033106	cis-Golgi network membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.264; coverage=60.839; evalue=5.88e-35; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004721	phosphoprotein phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.295; coverage=85.315; evalue=3.21e-41; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004722	protein serine/threonine phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.295; coverage=85.315; evalue=3.21e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016791	phosphatase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.295; coverage=85.315; evalue=3.21e-41; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019900	kinase binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.295; coverage=85.315; evalue=3.21e-41; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019901	protein kinase binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.295; coverage=85.315; evalue=3.21e-41; UniProt GO evidence=IPI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046872	metal ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.295; coverage=85.315; evalue=3.21e-41; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G07430	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.713; coverage=60.839; evalue=2.47e-39	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G29380	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.816; coverage=60.839; evalue=2.81e-34	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G11410	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=62.295; coverage=85.315; evalue=3.21e-41	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G59220	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.264; coverage=60.839; evalue=5.88e-35	UniProtKB/Swiss-Prot DAT 2026 current_release