Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | TkA01G070560 |
|---|---|
| Query reference | TK1151 |
| Location | Chr01:18043840-18045993 (+) |
| Description | Similar to DNMT2: tRNA (cytosine(38)-C(5))-methyltransferase 2 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_038389 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
This query returns 26 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g25480 |
Specifically methylates cytosine 38 in the anticodon loop of tRNA(Asp) (By similarity). |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000226 | microtubule cytoskeleton organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.286; coverage=98.315; evalue=4.96e-68; UniProt GO evidence=IMP:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000281 | mitotic cytokinesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.286; coverage=98.315; evalue=4.96e-68; UniProt GO evidence=IMP:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001975 | response to amphetamine | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.097; coverage=104.494; evalue=7.78e-66; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.017; coverage=99.438; evalue=1.31e-153; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006400 | tRNA modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.544; coverage=105.899; evalue=2.29e-67; UniProt GO evidence=IDA:UniProt | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006998 | nuclear envelope organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.286; coverage=98.315; evalue=4.96e-68; UniProt GO evidence=IMP:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008033 | tRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.017; coverage=99.438; evalue=1.31e-153; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010526 | transposable element silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.286; coverage=98.315; evalue=4.96e-68; UniProt GO evidence=IDA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010628 | positive regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.286; coverage=98.315; evalue=4.96e-68; UniProt GO evidence=IMP:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010629 | negative regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.286; coverage=98.315; evalue=4.96e-68; UniProt GO evidence=IMP:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019954 | asexual reproduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.286; coverage=98.315; evalue=4.96e-68; UniProt GO evidence=IMP:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030435 | sporulation resulting in formation of a cellular spore | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.286; coverage=98.315; evalue=4.96e-68; UniProt GO evidence=IMP:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030488 | tRNA methylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.286; coverage=98.315; evalue=4.96e-68; UniProt GO evidence=IDA:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032259 | methylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.017; coverage=99.438; evalue=1.31e-153; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036416 | tRNA stabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.544; coverage=105.899; evalue=2.29e-67; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0040029 | epigenetic regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.286; coverage=98.315; evalue=4.96e-68; UniProt GO evidence=IMP:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045814 | negative regulation of gene expression, epigenetic | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.017; coverage=99.438; evalue=1.31e-153; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.017; coverage=99.438; evalue=1.31e-153; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.544; coverage=105.899; evalue=2.29e-67; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.544; coverage=105.899; evalue=2.29e-67; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.286; coverage=98.315; evalue=4.96e-68; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.017; coverage=99.438; evalue=1.31e-153; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003886 | DNA (cytosine-5-)-methyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.286; coverage=98.315; evalue=4.96e-68; UniProt GO evidence=IMP:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008175 | tRNA methyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.544; coverage=105.899; evalue=2.29e-67; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016427 | tRNA (cytidine) methyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.286; coverage=98.315; evalue=4.96e-68; UniProt GO evidence=IDA:dictyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016428 | tRNA (cytidine-5-)-methyltransferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.017; coverage=99.438; evalue=1.31e-153; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G25480 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.017; coverage=99.438; evalue=1.31e-153 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | bta:353353 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.097; coverage=104.494; evalue=5.52e-66 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0288047 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.286; coverage=98.315; evalue=4.96e-68 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:1787 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.544; coverage=105.899; evalue=2.29e-67 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:291324 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.097; coverage=104.494; evalue=7.78e-66 | UniProtKB/Swiss-Prot DAT 2026 current_release |