Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA01G048570`
Query reference	TK1151
Location	Chr01:12543035-12547936 (-)
Description	Similar to SKL2: Probable inactive shikimate kinase like 2%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_005453 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 27 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g32230`	Inactive ADP-ribosyltransferase that functions with SRO1 to regulate oxidative stress, hormonal and developmental responses.	CEO1, a new protein from Arabidopsis thaliana, protects yeast against oxidative damage.2000 · DOI: 10.1016/s0014-5793(00)02016-0 Ozone-sensitive arabidopsis rcd1 mutant reveals opposite roles for ethylene and jasmonate signaling pathways in regulating superoxide-dependent cell death.2000 · DOI: 10.1105/tpc.12.10.1849 A methyl viologen-resistant mutant of Arabidopsis, which is allelic to ozone-sensitive rcd1, is tolerant to supplemental ultraviolet-B irradiation.2004 · DOI: 10.1104/pp.103.033480 Arabidopsis RADICAL-INDUCED CELL DEATH1 belongs to the WWE protein-protein interaction domain protein family and modulates abscisic acid, ethylene, and methyl jasmonate responses.2004 · DOI: 10.1105/tpc.021832 Ozone-induced programmed cell death in the Arabidopsis radical-induced cell death1 mutant.2005 · DOI: 10.1104/pp.104.055681 Overexpression of the RADICAL-INDUCED CELL DEATH1 (RCD1) gene of Arabidopsis causes weak rcd1 phenotype with compromised oxidative-stress responses.2006 · DOI: 10.1271/bbb.50673 Unequally redundant RCD1 and SRO1 mediate stress and developmental responses and interact with transcription factors.2009 · DOI: 10.1111/j.1365-313x.2009.03951.x The paralogous genes RADICAL-INDUCED CELL DEATH1 and SIMILAR TO RCD ONE1 have partially redundant functions during Arabidopsis development.2009 · DOI: 10.1104/pp.109.142786 RCD1 and SRO1 are necessary to maintain meristematic fate in Arabidopsis thaliana.2011 · DOI: 10.1093/jxb/erq363
`At2g35510`	Probable inactive ADP-ribosyltransferase that functions with RCD1 to regulate oxidative stress, hormonal and developmental responses.	Unequally redundant RCD1 and SRO1 mediate stress and developmental responses and interact with transcription factors.2009 · DOI: 10.1111/j.1365-313x.2009.03951.x The paralogous genes RADICAL-INDUCED CELL DEATH1 and SIMILAR TO RCD ONE1 have partially redundant functions during Arabidopsis development.2009 · DOI: 10.1104/pp.109.142786 RCD1 and SRO1 are necessary to maintain meristematic fate in Arabidopsis thaliana.2011 · DOI: 10.1093/jxb/erq363
`At1g23550`	Probable inactive ADP-ribosyltransferase that may be involved in stress and developmental responses.	No verified direct reference in this release
`At1g70440`	Probable inactive ADP-ribosyltransferase that may be involved in stress and developmental responses.	No verified direct reference in this release
`At5g62520`	Probable inactive ADP-ribosyltransferase that may be involved in stress and developmental responses.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000303	response to superoxide	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.111; coverage=30.752; evalue=1.19e-87; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000398	mRNA splicing, via spliceosome	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.731; coverage=26.481; evalue=3.9e-90; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0002758	innate immune response-activating signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.731; coverage=26.481; evalue=3.9e-90; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006809	nitric oxide biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.111; coverage=30.752; evalue=1.19e-87; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006950	response to stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.059; coverage=18.28; evalue=3.63e-119; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006970	response to osmotic stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.111; coverage=30.752; evalue=1.19e-87; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006979	response to oxidative stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.286; coverage=32.631; evalue=1.97e-74; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009073	aromatic amino acid family biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.059; coverage=18.28; evalue=3.63e-119; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009414	response to water deprivation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.111; coverage=30.752; evalue=1.19e-87; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009651	response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.111; coverage=30.752; evalue=1.19e-87; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009723	response to ethylene	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.111; coverage=30.752; evalue=1.19e-87; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009793	embryo development ending in seed dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.111; coverage=30.752; evalue=1.19e-87; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009867	jasmonic acid mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.111; coverage=30.752; evalue=1.19e-87; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009873	ethylene-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.111; coverage=30.752; evalue=1.19e-87; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010102	lateral root morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.111; coverage=30.752; evalue=1.19e-87; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010193	response to ozone	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.111; coverage=30.752; evalue=1.19e-87; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0012501	programmed cell death	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.111; coverage=30.752; evalue=1.19e-87; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042742	defense response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.731; coverage=26.481; evalue=3.9e-90; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048573	photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.286; coverage=32.631; evalue=1.97e-74; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000377	regulation of reactive oxygen species metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.111; coverage=30.752; evalue=1.19e-87; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.731; coverage=26.481; evalue=3.9e-90; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005681	spliceosomal complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.731; coverage=26.481; evalue=3.9e-90; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.111; coverage=30.752; evalue=1.19e-87; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.059; coverage=18.28; evalue=3.63e-119; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016363	nuclear matrix	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.111; coverage=30.752; evalue=1.19e-87; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.731; coverage=26.481; evalue=3.9e-90; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003950	NAD+ poly-ADP-ribosyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.111; coverage=30.752; evalue=1.19e-87; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G32230	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=36.111; coverage=30.752; evalue=1.19e-87	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G33520	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.731; coverage=26.481; evalue=3.9e-90	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G35500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.059; coverage=18.28; evalue=3.63e-119	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G35510	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.286; coverage=32.631; evalue=1.97e-74	UniProtKB/Swiss-Prot DAT 2026 current_release