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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA01G038440
Query referenceTK1151
LocationChr01:9933314-9935969 (-)
DescriptionSimilar to SPO11-2: Meiotic recombination protein SPO11-2 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_005516 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 20 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g63990 Component of a topoisomerase 6 complex specifically required for meiotic recombination.
Arabidopsis SPO11-2 functions with SPO11-1 in meiotic recombination.2006 · DOI: 10.1111/j.1365-313x.2006.02867.x
The catalytically active tyrosine residues of both SPO11-1 and SPO11-2 are required for meiotic double-strand break induction in Arabidopsis.2007 · DOI: 10.1105/tpc.107.054817
A high throughput genetic screen identifies new early meiotic recombination functions in Arabidopsis thaliana.2009 · DOI: 10.1371/journal.pgen.1000654
A DNA topoisomerase VI-like complex initiates meiotic recombination.2016 · DOI: 10.1126/science.aad5196
At5g02820 Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles.
A crucial role for the putative Arabidopsis topoisomerase VI in plant growth and development.2002 · DOI: 10.1073/pnas.152337599
DNA topoisomerase VI is essential for endoreduplication in Arabidopsis.2002 · DOI: 10.1016/s0960-9822(02)01198-3

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: Q5ZPI9 Required for meiotic recombination. No verified direct reference in this release
Os08g0156900 Required for meiotic recombination. No verified direct reference in this release
UniProt: A2XFC1 Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000706meiotic DNA double-strand break processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.067; coverage=98.425; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006265DNA topological changeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.451; coverage=86.089; evalue=4.2e-58; UniProt GO evidence=IEA:UniProtKB-UniRuleUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007059chromosome segregationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.067; coverage=98.425; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007129homologous chromosome pairing at meiosisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.067; coverage=98.425; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007131reciprocal meiotic recombinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.067; coverage=98.425; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009553embryo sac developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.067; coverage=98.425; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009555pollen developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.067; coverage=98.425; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042138meiotic DNA double-strand break formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.067; coverage=98.425; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048316seed developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.067; coverage=98.425; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051026chiasma assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.067; coverage=98.425; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051321meiotic cell cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.067; coverage=98.425; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000228nuclear chromosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.067; coverage=98.425; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.067; coverage=98.425; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009330DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.451; coverage=86.089; evalue=4.2e-58; UniProt GO evidence=IEA:UniProtKB-UniRuleUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000287magnesium ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.451; coverage=86.089; evalue=4.2e-58; UniProt GO evidence=IEA:UniProtKB-UniRuleUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.067; coverage=98.425; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003918DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.067; coverage=98.425; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.067; coverage=98.425; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016787hydrolase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=65.526; coverage=99.738; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.067; coverage=98.425; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G63990KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.067; coverage=98.425; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os03g0284800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.451; coverage=86.089; evalue=4.2e-58UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os08g0156900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.263; coverage=99.738; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4332468KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.451; coverage=86.089; evalue=4.2e-58UniProtKB/Swiss-Prot DAT 2026 current_release