Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA01G028250`
Query reference	TK1151
Location	Chr01:7245158-7247840 (+)
Description	Similar to Os01g0513800: Ribosome production factor 2 homolog (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_005608 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 13 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g23620`	Ribosome production factor 2 homolog.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0513800`	Ribosome production factor 2 homolog.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000027	ribosomal large subunit assembly	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.845; coverage=90.087; evalue=2.73e-163; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.845; coverage=90.087; evalue=2.73e-163; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006364	rRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.687; coverage=86.589; evalue=9.47e-150; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042273	ribosomal large subunit biogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.614; coverage=83.09; evalue=2.93e-71; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1902570	protein localization to nucleolus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.614; coverage=83.09; evalue=2.93e-71; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.687; coverage=86.589; evalue=9.47e-150; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.614; coverage=83.09; evalue=2.93e-71; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005694	chromosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.614; coverage=83.09; evalue=2.93e-71; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005730	nucleolus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.845; coverage=90.087; evalue=2.73e-163; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.614; coverage=83.09; evalue=2.93e-71; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.013; coverage=90.087; evalue=1.4e-67; UniProt GO evidence=HDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008097	5S rRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.614; coverage=83.09; evalue=2.93e-71; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019843	rRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.845; coverage=90.087; evalue=2.73e-163; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G23620	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.687; coverage=86.589; evalue=9.47e-150	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	bta:511294	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.087; coverage=90.671; evalue=3.05e-67	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0513800	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.845; coverage=90.087; evalue=2.73e-163	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	hsa:84154	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=44.013; coverage=90.087; evalue=1.4e-67	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	mmu:67239	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.614; coverage=83.09; evalue=2.93e-71	UniProtKB/Swiss-Prot DAT 2026 current_release