RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene IDTkA01G003450
Query referenceTK1151
LocationChr01:930587-932723 (-)
DescriptionSimilar to MWL1: Protein MODIFYING WALL LIGNIN-1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_011777 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 14 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g31720 Together with MWL2, contributes to secondary cell wall biology, specifically lignin biosynthesis.
The Arabidopsis Domain of Unknown Function 1218 (DUF1218) Containing Proteins, MODIFYING WALL LIGNIN-1 and 2 (At1g31720/MWL-1 and At4g19370/MWL-2) Function Redundantly to Alter Secondary Cell Wall Lignin Content.2016 · DOI: 10.1371/journal.pone.0150254
At4g19370 Together with MWL1, contributes to secondary cell wall biology, specifically lignin biosynthesis.
The Arabidopsis Domain of Unknown Function 1218 (DUF1218) Containing Proteins, MODIFYING WALL LIGNIN-1 and 2 (At1g31720/MWL-1 and At4g19370/MWL-2) Function Redundantly to Alter Secondary Cell Wall Lignin Content.2016 · DOI: 10.1371/journal.pone.0150254

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009808lignin metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.058; coverage=60.5; evalue=4.54e-12; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009809lignin biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.058; coverage=60.5; evalue=4.54e-12; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009855determination of bilateral symmetryBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.752; coverage=60.5; evalue=4.92e-08; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010087phloem or xylem histogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.752; coverage=60.5; evalue=4.92e-08; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010305leaf vascular tissue pattern formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.752; coverage=60.5; evalue=4.92e-08; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010588cotyledon vascular tissue pattern formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.752; coverage=60.5; evalue=4.92e-08; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048366leaf developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.752; coverage=60.5; evalue=4.92e-08; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048825cotyledon developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.752; coverage=60.5; evalue=4.92e-08; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140964intracellular auxin homeostasisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.752; coverage=60.5; evalue=4.92e-08; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005576extracellular regionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.888; coverage=98.5; evalue=2.88e-10; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005789endoplasmic reticulum membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.752; coverage=60.5; evalue=4.92e-08; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.058; coverage=60.5; evalue=4.54e-12; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.058; coverage=60.5; evalue=4.54e-12; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.058; coverage=60.5; evalue=4.54e-12; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G31720KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=33.058; coverage=60.5; evalue=4.54e-12UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G32280KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.752; coverage=60.5; evalue=4.92e-08UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G19370KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=25.888; coverage=98.5; evalue=2.88e-10UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G21310KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=23.729; coverage=88.5; evalue=7.55e-06UniProtKB/Swiss-Prot DAT 2026 current_release