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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDTkA01G002820
Query referenceTK1151
LocationChr01:746002-747971 (+)
DescriptionSimilar to PVA11: Vesicle-associated protein 1-1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_005989 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 12 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g45140 Vesicle-associated protein that binds the oxysterol-binding protein ORP3A and allows its targeting to the ER.
The targeting of the oxysterol-binding protein ORP3a to the endoplasmic reticulum relies on the plant VAP33 homolog PVA12.2009 · DOI: 10.1111/j.1365-313x.2009.03815.x
At4g00170 May play a role in vesicle trafficking. No verified direct reference in this release
At3g60600 Part of a membrane-cytoskeletal adapter complex that forms a bridge between the endoplasmic reticulum and the plasma membrane. No verified direct reference in this release
At1g51270 May play a role in vesicle trafficking. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006605protein targetingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.259; coverage=89.627; evalue=1.39e-89; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061817endoplasmic reticulum-plasma membrane tetheringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.187; coverage=90.871; evalue=3.58e-91; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090158endoplasmic reticulum membrane organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.187; coverage=90.871; evalue=3.58e-91; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000326protein storage vacuoleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.187; coverage=90.871; evalue=3.58e-91; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005776autophagosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.187; coverage=90.871; evalue=3.58e-91; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005783endoplasmic reticulumCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.187; coverage=90.871; evalue=3.58e-91; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005789endoplasmic reticulum membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.187; coverage=90.871; evalue=3.58e-91; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.187; coverage=90.871; evalue=3.58e-91; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.187; coverage=90.871; evalue=3.58e-91; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009536plastidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.102; coverage=97.925; evalue=2.68e-57; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032586protein storage vacuole membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.187; coverage=90.871; evalue=3.58e-91; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043495protein-membrane adaptor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.187; coverage=90.871; evalue=3.58e-91; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G23830KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=66.667; coverage=52.282; evalue=1.56e-57UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G45140KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.259; coverage=89.627; evalue=1.39e-89UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G60600KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.187; coverage=90.871; evalue=3.58e-91UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G00170KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=53.942; coverage=100.0; evalue=1.28e-81UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G47180KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.102; coverage=97.925; evalue=2.68e-57UniProtKB/Swiss-Prot DAT 2026 current_release