Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_039708`
Query reference	OH1004
Location	JAJTUU010000029.1:230860-231628 (-)
Description	Similar to DOGL3: Protein DOG1-like 3 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_039708 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 10 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g18690`	Protein DOG1-like 3.	No verified direct reference in this release
`At4g18660`	Protein DOG1-like 1.	No verified direct reference in this release
`At4g18650`	Protein DOG1-like 4.	No verified direct reference in this release
`At4g18680`	Protein DOG1-like 2.	No verified direct reference in this release
`At5g45830`	Required for the induction of seed dormancy.	Cloning of DOG1, a quantitative trait locus controlling seed dormancy in Arabidopsis.2006 · DOI: 10.1073/pnas.0607877103 The Arabidopsis GSQ5/DOG1 Cvi allele is induced by the ABA-mediated sugar signalling pathway, and enhances sugar sensitivity by stimulating ABI4 expression.2008 · DOI: 10.1111/j.1365-313x.2008.03515.x The time required for dormancy release in Arabidopsis is determined by DELAY OF GERMINATION1 protein levels in freshly harvested seeds.2012 · DOI: 10.1105/tpc.112.100214 Seed Dormancy in Arabidopsis Is Controlled by Alternative Polyadenylation of DOG1.2016 · DOI: 10.1104/pp.15.01483 The Arabidopsis DELAY OF GERMINATION 1 gene affects ABSCISIC ACID INSENSITIVE 5 (ABI5) expression and genetically interacts with ABI3 during Arabidopsis seed development.2016 · DOI: 10.1111/tpj.13118 DELAY OF GERMINATION1 (DOG1) regulates both seed dormancy and flowering time through microRNA pathways.2016 · DOI: 10.1073/pnas.1600558113

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.16; coverage=107.048; evalue=4.91e-27; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.333; coverage=99.119; evalue=4.92e-21; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009738	abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.333; coverage=99.119; evalue=4.92e-21; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010162	seed dormancy process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.333; coverage=99.119; evalue=4.92e-21; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010182	sugar mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.333; coverage=99.119; evalue=4.92e-21; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000033	regulation of seed dormancy process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.333; coverage=99.119; evalue=4.92e-21; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.16; coverage=107.048; evalue=4.91e-27; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.098; coverage=112.335; evalue=6.56e-22; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042802	identical protein binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.333; coverage=99.119; evalue=4.92e-21; UniProt GO evidence=IPI:IntAct	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.16; coverage=107.048; evalue=4.91e-27; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G18650	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.879; coverage=102.203; evalue=4.51e-22	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G18660	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=25.098; coverage=112.335; evalue=6.56e-22	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G18680	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=27.706; coverage=101.762; evalue=7.9e-22	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G18690	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.16; coverage=107.048; evalue=4.91e-27	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G45830	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.333; coverage=99.119; evalue=4.92e-21	UniProtKB/Swiss-Prot DAT 2026 current_release