Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_039071 |
|---|---|
| Query reference | OH1004 |
| Location | Chr09:58489541-58495204 (-) |
| Description | Similar to CAND1: Cullin-associated NEDD8-dissociated protein 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_039071 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 24 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g02560 |
Key assembly factor of SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complexes that promotes the exchange of the substrate-recognition F-box subunit in SCF complexes, thereby playing a key role in the cellular repertoire of SCF complexes. |
AtCAND1, a HEAT-repeat protein that participates in auxin signaling in Arabidopsis.2004 · DOI: 10.1104/pp.104.044495 Arabidopsis CAND1, an unmodified CUL1-interacting protein, is involved in multiple developmental pathways controlled by ubiquitin/proteasome-mediated protein Degradation.2004 · DOI: 10.1105/tpc.021949 Arabidopsis ETA2, an apparent ortholog of the human cullin-interacting protein CAND1, is required for auxin responses mediated by the SCF(TIR1) ubiquitin ligase.2004 · DOI: 10.1105/tpc.021923
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.653; coverage=96.105; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009733 | response to auxin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.653; coverage=96.105; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010051 | xylem and phloem pattern formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.653; coverage=96.105; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010228 | vegetative to reproductive phase transition of meristem | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.653; coverage=96.105; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010265 | SCF complex assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.653; coverage=96.105; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.653; coverage=96.105; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030154 | cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.136; coverage=97.854; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043086 | negative regulation of catalytic activity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.136; coverage=97.854; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.136; coverage=97.854; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045899 | positive regulation of RNA polymerase II transcription preinitiation complex assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.136; coverage=97.854; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000151 | ubiquitin ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.136; coverage=97.854; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005576 | extracellular region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.136; coverage=97.854; evalue=0.0; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.653; coverage=96.105; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.136; coverage=97.854; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.811; coverage=97.854; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.136; coverage=97.854; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.136; coverage=97.854; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.653; coverage=96.105; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009505 | plant-type cell wall | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.653; coverage=96.105; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.136; coverage=97.854; evalue=0.0; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031461 | cullin-RING ubiquitin ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.811; coverage=97.854; evalue=0.0; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034774 | secretory granule lumen | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.136; coverage=97.854; evalue=0.0; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070062 | extracellular exosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.136; coverage=97.854; evalue=0.0; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0017025 | TBP-class protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.136; coverage=97.854; evalue=0.0; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G02560 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=79.653; coverage=96.105; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:55832 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.136; coverage=97.854; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:71902 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.136; coverage=97.854; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pon:100173509 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.811; coverage=97.854; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:117152 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.136; coverage=97.854; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release |