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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_038976
Query referenceOH1004
LocationChr09:55281124-55282637 (+)
DescriptionSimilar to IM30: Membrane-associated 30 kDa protein%2C chloroplastic (Pisum sativum OX%3D3888)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_038976 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 11 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g65260 Required for plastid vesicle formation and thylakoid membrane biogenesis, but not for functional assembly of thylakoid protein complexes.
VIPP1, a nuclear gene of Arabidopsis thaliana essential for thylakoid membrane formation.2001 · DOI: 10.1073/pnas.061500998
Vipp1 is required for basic thylakoid membrane formation but not for the assembly of thylakoid protein complexes.2007 · DOI: 10.1016/j.plaphy.2007.01.005

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0895100 Required for plastid vesicle formation and thylakoid membrane biogenesis, but not for functional assembly of thylakoid protein complexes. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0010027thylakoid membrane organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.333; coverage=35.762; evalue=1.62e-23; UniProt GO evidence=IEA:TreeGrafterUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016050vesicle organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.062; coverage=42.384; evalue=1.31e-20; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.062; coverage=42.384; evalue=1.31e-20; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.062; coverage=42.384; evalue=1.31e-20; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009534chloroplast thylakoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.062; coverage=42.384; evalue=1.31e-20; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009535chloroplast thylakoid membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.333; coverage=35.762; evalue=1.62e-23; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.062; coverage=42.384; evalue=1.31e-20; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009706chloroplast inner membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.333; coverage=35.762; evalue=1.62e-23; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009707chloroplast outer membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=83.333; coverage=35.762; evalue=1.62e-23; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009941chloroplast envelopeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.062; coverage=42.384; evalue=1.31e-20; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042644chloroplast nucleoidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.062; coverage=42.384; evalue=1.31e-20; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G65260KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.062; coverage=42.384; evalue=1.31e-20UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0895100KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.254; coverage=41.722; evalue=3.2e-22UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4324967KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=68.254; coverage=41.722; evalue=3.2e-22UniProtKB/Swiss-Prot DAT 2026 current_release