Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene ID	`LXL04_038958`
Query reference	OH1004
Location	Chr09:54777640-54785305 (-)
Description	Similar to REV3: DNA polymerase zeta catalytic subunit (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_038958 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 20 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g67500`	Catalytic subunit of the error prone DNA polymerase zeta.	Disruption of the AtREV3 gene causes hypersensitivity to ultraviolet B light and gamma-rays in Arabidopsis: implication of the presence of a translesion synthesis mechanism in plants.2003 · DOI: 10.1105/tpc.012369 Roles of Arabidopsis AtREV1 and AtREV7 in translesion synthesis.2005 · DOI: 10.1104/pp.105.060236 RAD5a and REV3 function in two alternative pathways of DNA-damage tolerance in Arabidopsis.2011 · DOI: 10.1016/j.dnarep.2011.04.009

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000724	double-strand break repair via homologous recombination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.481; coverage=113.048; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006261	DNA-templated DNA replication	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.659; coverage=51.443; evalue=0.0; UniProt GO evidence=TAS:ProtInc	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006281	DNA repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.481; coverage=113.048; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006974	DNA damage response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.481; coverage=113.048; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009411	response to UV	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.481; coverage=113.048; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010224	response to UV-B	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.481; coverage=113.048; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0019985	translesion synthesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.156; coverage=54.099; evalue=0.0; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042276	error-prone translesion synthesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.481; coverage=113.048; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071494	cellular response to UV-C	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.481; coverage=113.048; evalue=0.0; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071897	DNA biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.156; coverage=54.099; evalue=0.0; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.481; coverage=113.048; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.659; coverage=51.443; evalue=0.0; UniProt GO evidence=TAS:Reactome	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005730	nucleolus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.156; coverage=54.099; evalue=0.0; UniProt GO evidence=IDA:MGI	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016035	zeta DNA polymerase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.481; coverage=113.048; evalue=0.0; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090734	site of DNA damage	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.156; coverage=54.099; evalue=0.0; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000166	nucleotide binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.481; coverage=113.048; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.481; coverage=113.048; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003887	DNA-directed DNA polymerase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.481; coverage=113.048; evalue=0.0; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.481; coverage=113.048; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051539	4 iron, 4 sulfur cluster binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.481; coverage=113.048; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G67500	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.481; coverage=113.048; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	hsa:5980	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=43.659; coverage=51.443; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	mmu:19714	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.156; coverage=54.099; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release