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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_038559
Query referenceOH1004
LocationChr09:43904792-43908708 (+)
DescriptionSimilar to KEA3: K(+) efflux antiporter 3%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_038559 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 42 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g04850 May act as an electroneutral K⁺/H⁺ antiporter mediating proton efflux from the thylakoid lumen to the chloroplast stroma.
A novel AtKEA gene family, homolog of bacterial K+/H+ antiporters, plays potential roles in K+ homeostasis and osmotic adjustment in Arabidopsis.2013 · DOI: 10.1371/journal.pone.0081463
Ion antiport accelerates photosynthetic acclimation in fluctuating light environments.2014 · DOI: 10.1038/ncomms6439
Regulation and Levels of the Thylakoid K+/H+ Antiporter KEA3 Shape the Dynamic Response of Photosynthesis in Fluctuating Light.2016 · DOI: 10.1093/pcp/pcw085
Rapid hyperosmotic-induced Ca2+ responses in Arabidopsis thaliana exhibit sensory potentiation and involvement of plastidial KEA transporters.2016 · DOI: 10.1073/pnas.1519555113
Photosynthesis in Arabidopsis Is Unaffected by the Function of the Vacuolar K + Channel TPK3.2019 · DOI: 10.1104/pp.19.00255
K + and Cl - channels/transporters independently fine-tune photosynthesis in plants.2019 · DOI: 10.1038/s41598-019-44972-z
Evidence for potassium transport activity of Arabidopsis KEA1-KEA6.2019 · DOI: 10.1038/s41598-019-46463-7
Modification of Activity of the Thylakoid H + /K + Antiporter KEA3 Disturbs ∆pH-Dependent Regulation of Photosynthesis.2019 · DOI: 10.1104/pp.19.00766
H + Transport by K + EXCHANGE ANTIPORTER3 Promotes Photosynthesis and Growth in Chloroplast ATP Synthase Mutants.2020 · DOI: 10.1104/pp.19.01561
Collaboration between NDH and KEA3 Allows Maximally Efficient Photosynthesis after a Long Dark Adaptation.2020 · DOI: 10.1104/pp.20.01069
At4g00630 May act as an electroneutral K⁺/H⁺ antiporter regulating monovalent-cation and pH homeostasis in plastids.
Arabidopsis KEA2, a homolog of bacterial KefC, encodes a K(+)/H(+) antiporter with a chloroplast transit peptide.2012 · DOI: 10.1016/j.bbamem.2012.04.011
A novel AtKEA gene family, homolog of bacterial K+/H+ antiporters, plays potential roles in K+ homeostasis and osmotic adjustment in Arabidopsis.2013 · DOI: 10.1371/journal.pone.0081463
Envelope K+/H+ Antiporters AtKEA1 and AtKEA2 Function in Plastid Development.2016 · DOI: 10.1104/pp.16.00995
Plastidial transporters KEA1 and KEA2 at the inner envelope membrane adjust stromal pH in the dark.2021 · DOI: 10.1111/nph.17042
Loss of function of the chloroplast membrane K + /H + antiporters AtKEA1 and AtKEA2 alters the ROS and NO metabolism but promotes drought stress resilience.2021 · DOI: 10.1016/j.plaphy.2021.01.010
Loss of inner-envelope K+/H+ exchangers impairs plastid rRNA maturation and gene expression.2021 · DOI: 10.1093/plcell/koab123
Exogenous sucrose influences KEA1 and KEA2 to regulate abscisic acid-mediated primary root growth in Arabidopsis.2022 · DOI: 10.1016/j.plantsci.2022.111209
At1g01790 May act as an electroneutral K⁺/H⁺ antiporter in chloroplast K⁺ homeostasis, osmotic adjustment and plastid development.
A novel AtKEA gene family, homolog of bacterial K+/H+ antiporters, plays potential roles in K+ homeostasis and osmotic adjustment in Arabidopsis.2013 · DOI: 10.1371/journal.pone.0081463
Envelope K+/H+ Antiporters AtKEA1 and AtKEA2 Function in Plastid Development.2016 · DOI: 10.1104/pp.16.00995
Evidence for potassium transport activity of Arabidopsis KEA1-KEA6.2019 · DOI: 10.1038/s41598-019-46463-7
Plastidial transporters KEA1 and KEA2 at the inner envelope membrane adjust stromal pH in the dark.2021 · DOI: 10.1111/nph.17042
Loss of function of the chloroplast membrane K + /H + antiporters AtKEA1 and AtKEA2 alters the ROS and NO metabolism but promotes drought stress resilience.2021 · DOI: 10.1016/j.plaphy.2021.01.010
Loss of inner-envelope K+/H+ exchangers impairs plastid rRNA maturation and gene expression.2021 · DOI: 10.1093/plcell/koab123
Exogenous sucrose influences KEA1 and KEA2 to regulate abscisic acid-mediated primary root growth in Arabidopsis.2022 · DOI: 10.1016/j.plantsci.2022.111209

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006813potassium ion transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006885regulation of pHBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009643photosynthetic acclimationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.314; coverage=95.396; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009644response to high light intensityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.314; coverage=95.396; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009646response to absence of lightBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009658chloroplast organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.314; coverage=95.396; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009737response to abscisic acidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009738abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009744response to sucroseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010109regulation of photosynthesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.314; coverage=95.396; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010196nonphotochemical quenchingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.314; coverage=95.396; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019722calcium-mediated signalingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.314; coverage=95.396; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042794plastid rRNA transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051595response to methylglyoxalBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.574; coverage=73.018; evalue=4.27e-70; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080022primary root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140899plastid gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1900069regulation of cellular hyperosmotic salinity responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.314; coverage=95.396; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1900140regulation of seedling developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1902600proton transmembrane transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1905157positive regulation of photosynthesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.314; coverage=95.396; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000070regulation of response to water deprivationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000377regulation of reactive oxygen species metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2001057reactive nitrogen species metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000139Golgi membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.314; coverage=95.396; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005576extracellular regionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.918; coverage=71.355; evalue=1.24e-84; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.314; coverage=95.396; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.574; coverage=73.018; evalue=4.27e-70; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.314; coverage=95.396; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009535chloroplast thylakoid membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.314; coverage=95.396; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009536plastidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009706chloroplast inner membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009941chloroplast envelopeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.314; coverage=95.396; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031969chloroplast membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.314; coverage=95.396; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042651thylakoid membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.314; coverage=95.396; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015078proton transmembrane transporter activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015079potassium ion transmembrane transporter activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015386potassium:proton antiporter activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.314; coverage=95.396; evalue=0.0; UniProt GO evidence=NAS:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015503glutathione-regulated potassium exporter activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.574; coverage=73.018; evalue=4.27e-70; UniProt GO evidence=IEA:UniProtKB-UniRuleUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015643toxic substance bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.574; coverage=73.018; evalue=4.27e-70; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019899enzyme bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.574; coverage=73.018; evalue=4.27e-70; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G01790KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=36.918; coverage=71.355; evalue=1.24e-84UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G00630KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.523; coverage=70.205; evalue=1.21e-84UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G04850KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.314; coverage=95.396; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGcko:CKO_03334KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.574; coverage=73.018; evalue=4.27e-70UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGcko:CKO_04758KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.675; coverage=77.11; evalue=7.78e-70UniProtKB/Swiss-Prot DAT 2026 current_release