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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_038558
Query referenceOH1004
LocationChr09:43900744-43901555 (+)
DescriptionSimilar to MSRB2: Peptide methionine sulfoxide reductase B2%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_038558 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 12 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g21860 Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins.
The Arabidopsis plastidic methionine sulfoxide reductase B proteins. Sequence and activity characteristics, comparison of the expression with plastidic methionine sulfoxide reductase A, and induction by photooxidative stress.2005 · DOI: 10.1104/pp.105.062430
Specificity of thioredoxins and glutaredoxins as electron donors to two distinct classes of Arabidopsis plastidial methionine sulfoxide reductases B.2007 · DOI: 10.1016/j.febslet.2007.07.081
Regeneration mechanisms of Arabidopsis thaliana methionine sulfoxide reductases B by glutaredoxins and thioredoxins.2009 · DOI: 10.1074/jbc.m109.015487
Arabidopsis thaliana plastidial methionine sulfoxide reductases B, MSRBs, account for most leaf peptide MSR activity and are essential for growth under environmental constraints through a role in the preservation of photosystem antennae.2010 · DOI: 10.1111/j.1365-313x.2009.04053.x
At4g04800 Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins.
Role of the methionine sulfoxide reductase MsrB3 in cold acclimation in Arabidopsis.2007 · DOI: 10.1093/pcp/pcm143
At4g04830 Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0360700 Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. No verified direct reference in this release
Os05g0404200 Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006979response to oxidative stressBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.69; coverage=71.782; evalue=4.36e-84; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009631cold acclimationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=77.444; coverage=65.842; evalue=3.06e-77; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030091protein repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.69; coverage=71.782; evalue=4.36e-84; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0034599cellular response to oxidative stressBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.69; coverage=71.782; evalue=4.36e-84; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=77.444; coverage=65.842; evalue=3.06e-77; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.69; coverage=71.782; evalue=4.36e-84; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005783endoplasmic reticulumCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=77.444; coverage=65.842; evalue=3.06e-77; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.69; coverage=71.782; evalue=4.36e-84; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.69; coverage=71.782; evalue=4.36e-84; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.69; coverage=71.782; evalue=4.36e-84; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0033743peptide-methionine (R)-S-oxide reductase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.69; coverage=71.782; evalue=4.36e-84; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.69; coverage=71.782; evalue=4.36e-84; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G04800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=77.444; coverage=65.842; evalue=3.06e-77UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G04830KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=78.788; coverage=65.347; evalue=7.27e-76UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G21860KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=80.69; coverage=71.782; evalue=4.36e-84UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os03g0360700KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=81.343; coverage=66.337; evalue=9.27e-81UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os05g0404200KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=84.0; coverage=61.881; evalue=2.27e-77UniProtKB/Swiss-Prot DAT 2026 current_release