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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_038420
Query referenceOH1004
LocationChr09:40416532-40418238 (+)
DescriptionSimilar to CYCD3-1: Cyclin-D3-1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_038420 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 11 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g34160 Involved in the control of the cell cycle at the G1/S (start) transition.
Cytokinin activation of Arabidopsis cell division through a D-type cyclin.1999 · DOI: 10.1126/science.283.5407.1541
Ectopic D-type cyclin expression induces not only DNA replication but also cell division in Arabidopsis trichomes.2002 · DOI: 10.1073/pnas.092657299
Altered cell cycle distribution, hyperplasia, and inhibited differentiation in Arabidopsis caused by the D-type cyclin CYCD3.2003 · DOI: 10.1105/tpc.004838
The D-type cyclin CYCD3;1 is limiting for the G1-to-S-phase transition in Arabidopsis.2006 · DOI: 10.1105/tpc.105.039636
Requirement for A-type cyclin-dependent kinase and cyclins for the terminal division in the stomatal lineage of Arabidopsis.2014 · DOI: 10.1093/jxb/eru139
At5g67260 Promotes divisions in the guard cells (GCs) after the guard mother cells (GMC) symmetric division when in the presence of CDKA-1. No verified direct reference in this release
At3g50070 Promotes divisions in the guard cells (GCs) after the guard mother cells (GMC) symmetric division. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0620800 Cyclin-D2-2. No verified direct reference in this release
Os03g0392000 Putative cyclin-D2-3. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000082G1/S transition of mitotic cell cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.255; coverage=78.771; evalue=1.77e-97; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009735response to cytokininBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.255; coverage=78.771; evalue=1.77e-97; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009744response to sucroseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.255; coverage=78.771; evalue=1.77e-97; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010444guard mother cell differentiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.255; coverage=78.771; evalue=1.77e-97; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048316seed developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.255; coverage=78.771; evalue=1.77e-97; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051301cell divisionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.255; coverage=78.771; evalue=1.77e-97; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1901371regulation of leaf morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.841; coverage=87.989; evalue=5.85e-94; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000307cyclin-dependent protein kinase holoenzyme complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.255; coverage=78.771; evalue=1.77e-97; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.255; coverage=78.771; evalue=1.77e-97; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.255; coverage=78.771; evalue=1.77e-97; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016538cyclin-dependent protein serine/threonine kinase regulator activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.255; coverage=78.771; evalue=1.77e-97; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G50070KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=46.179; coverage=84.078; evalue=2.74e-88UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G34160KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.255; coverage=78.771; evalue=1.77e-97UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G67260KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.841; coverage=87.989; evalue=5.85e-94UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os07g0620800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.41; coverage=63.408; evalue=4.13e-49UniProtKB/Swiss-Prot DAT 2026 current_release