Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_037963 |
|---|---|
| Query reference | OH1004 |
| Location | Chr09:26948107-26949896 (-) |
| Description | Similar to At3g07680: Transmembrane emp24 domain-containing protein p24beta2 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_037963 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 35 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g07680 |
Involved in vesicular protein trafficking. | No verified direct reference in this release |
At3g22845 |
Involved in vesicular protein trafficking. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006886 | intracellular protein transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.707; coverage=89.13; evalue=1.39e-109; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.707; coverage=89.13; evalue=1.39e-109; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007029 | endoplasmic reticulum organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007030 | Golgi organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.707; coverage=89.13; evalue=1.39e-109; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008104 | intracellular protein localization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009306 | protein secretion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010628 | positive regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034260 | negative regulation of GTPase activity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035264 | multicellular organism growth | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036499 | PERK-mediated unfolded protein response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045879 | negative regulation of smoothened signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048598 | embryonic morphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0072595 | maintenance of protein localization in organelle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0072659 | protein localization to plasma membrane | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090158 | endoplasmic reticulum membrane organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901301 | regulation of cargo loading into COPII-coated vesicle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903077 | negative regulation of protein localization to plasma membrane | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903912 | negative regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000638 | regulation of SREBP signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000325 | plant-type vacuole | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.175; coverage=91.739; evalue=1.19e-34; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.175; coverage=91.739; evalue=1.19e-34; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.707; coverage=89.13; evalue=1.39e-109; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005789 | endoplasmic reticulum membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.707; coverage=89.13; evalue=1.39e-109; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.707; coverage=89.13; evalue=1.39e-109; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.707; coverage=89.13; evalue=1.39e-109; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=ISS:HGNC-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030134 | COPII-coated ER to Golgi transport vesicle | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.707; coverage=89.13; evalue=1.39e-109; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030137 | COPI-coated vesicle | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030659 | cytoplasmic vesicle membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.179; coverage=84.783; evalue=2.12e-13; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030663 | COPI-coated vesicle membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032580 | Golgi cisterna membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.707; coverage=89.13; evalue=1.39e-109; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033116 | endoplasmic reticulum-Golgi intermediate compartment membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042589 | zymogen granule membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=ISS:HGNC-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005109 | frizzled binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=IPI:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005119 | smoothened binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12; UniProt GO evidence=IPI:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G07680 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=71.707; coverage=89.13; evalue=1.39e-109 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G22845 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.175; coverage=91.739; evalue=1.19e-34 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ddi:DDB_G0288053 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=27.179; coverage=84.783; evalue=2.12e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:56334 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.143; coverage=60.87; evalue=6.18e-12 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | nve:5502470 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=27.143; coverage=60.87; evalue=4.36e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release |