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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_037649
Query referenceOH1004
LocationChr09:17088221-17092369 (+)
DescriptionSimilar to SPA3: Protein SPA1-RELATED 3 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_037649 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 34 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g15354 Repressor of photomorphogenesis in the light.
The SPA1-like proteins SPA3 and SPA4 repress photomorphogenesis in the light.2003 · DOI: 10.1046/j.1365-313x.2003.01813.x
Functional and expression analysis of Arabidopsis SPA genes during seedling photomorphogenesis and adult growth.2006 · DOI: 10.1111/j.1365-313x.2006.02812.x
Arabidopsis SPA proteins regulate photoperiodic flowering and interact with the floral inducer CONSTANS to regulate its stability.2006 · DOI: 10.1242/dev.02481
At1g53090 Repressor of photomorphogenesis in the light.
The SPA1-like proteins SPA3 and SPA4 repress photomorphogenesis in the light.2003 · DOI: 10.1046/j.1365-313x.2003.01813.x
Functional and expression analysis of Arabidopsis SPA genes during seedling photomorphogenesis and adult growth.2006 · DOI: 10.1111/j.1365-313x.2006.02812.x
Arabidopsis SPA proteins regulate photoperiodic flowering and interact with the floral inducer CONSTANS to regulate its stability.2006 · DOI: 10.1242/dev.02481
At4g11110 Involved in suppression of photomorphogenesis in dark-grown seedlings.
The SPA quartet: a family of WD-repeat proteins with a central role in suppression of photomorphogenesis in arabidopsis.2004 · DOI: 10.1105/tpc.104.024216
Functional and expression analysis of Arabidopsis SPA genes during seedling photomorphogenesis and adult growth.2006 · DOI: 10.1111/j.1365-313x.2006.02812.x
UniProt: Q9SYX2 Controls normal photoperiodic flowering and regulates circadian rhythms. No verified direct reference in this release
At2g32950 E3 ubiquitin-protein ligase that acts as a repressor of photomorphogenesis and as an activator of etiolation in darkness.
Two interacting bZIP proteins are direct targets of COP1-mediated control of light-dependent gene expression in Arabidopsis.2002 · DOI: 10.1101/gad.969702
Short Hypocotyl in White Light1 Interacts with Elongated Hypocotyl5 (HY5) and Constitutive Photomorphogenic1 (COP1) and Promotes COP1-Mediated Degradation of HY5 during Arabidopsis Seedling Development.2015 · DOI: 10.1104/pp.15.01184
PHYTOCHROME INTERACTING FACTOR8 Inhibits Phytochrome A-Mediated Far-Red Light Responses in Arabidopsis.2020 · DOI: 10.1105/tpc.19.00515
Role of a COP1 interactive protein in mediating light-regulated gene expression in arabidopsis.1998 · DOI: 10.1105/tpc.10.7.1083

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006281DNA repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.091; coverage=65.789; evalue=9.86e-119; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009585red, far-red light phototransductionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.565; coverage=104.426; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009637response to blue lightBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.832; coverage=94.019; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009640photomorphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.565; coverage=104.426; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009641shade avoidanceBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.091; coverage=65.789; evalue=9.86e-119; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009647skotomorphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.091; coverage=65.789; evalue=9.86e-119; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009649entrainment of circadian clockBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.091; coverage=65.789; evalue=9.86e-119; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009658chloroplast organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.684; coverage=94.378; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009963positive regulation of flavonoid biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.091; coverage=65.789; evalue=9.86e-119; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010017red or far-red light signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.684; coverage=94.378; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010100negative regulation of photomorphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.684; coverage=94.378; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010114response to red lightBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.684; coverage=94.378; evalue=0.0; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010119regulation of stomatal movementBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.091; coverage=65.789; evalue=9.86e-119; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010218response to far red lightBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.684; coverage=94.378; evalue=0.0; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010224response to UV-BBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.091; coverage=65.789; evalue=9.86e-119; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016567protein ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.091; coverage=65.789; evalue=9.86e-119; UniProt GO evidence=IEA:UniProtKB-UniPathwayUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043161proteasome-mediated ubiquitin-dependent protein catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.091; coverage=65.789; evalue=9.86e-119; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046283anthocyanin-containing compound metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.091; coverage=65.789; evalue=9.86e-119; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048573photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.091; coverage=65.789; evalue=9.86e-119; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048575short-day photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.684; coverage=94.378; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000028regulation of photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.684; coverage=94.378; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000152nuclear ubiquitin ligase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.091; coverage=65.789; evalue=9.86e-119; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.565; coverage=104.426; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.091; coverage=65.789; evalue=9.86e-119; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.832; coverage=94.019; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016604nuclear bodyCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.684; coverage=94.378; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016607nuclear speckCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.684; coverage=94.378; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080008Cul4-RING E3 ubiquitin ligase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.565; coverage=104.426; evalue=0.0; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004672protein kinase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.565; coverage=104.426; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004842ubiquitin-protein transferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.091; coverage=65.789; evalue=9.86e-119; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.565; coverage=104.426; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.091; coverage=65.789; evalue=9.86e-119; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042802identical protein bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.565; coverage=104.426; evalue=0.0; UniProt GO evidence=IPI:IntActUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061630ubiquitin protein ligase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.091; coverage=65.789; evalue=9.86e-119; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G53090KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=61.832; coverage=94.019; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G32950KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.091; coverage=65.789; evalue=9.86e-119UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G46340KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.684; coverage=94.378; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G15354KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.565; coverage=104.426; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G11110KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.146; coverage=93.9; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release