Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_037291`
Query reference	OH1004
Location	Chr09:5257584-5259129 (+)
Description	Similar to RTL2: Ribonuclease 3-like protein 2 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_037291 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 26 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g20420`	Ribonuclease that cleaves double-stranded RNA (dsRNA).	Characterization of a ribonuclease III-like protein required for cleavage of the pre-rRNA in the 3'ETS in Arabidopsis.2008 · DOI: 10.1093/nar/gkm1130 An Arabidopsis RNase III-like protein, AtRTL2, cleaves double-stranded RNA in vitro.2011 · DOI: 10.1007/s10265-010-0382-x
`At1g01040`	Ribonuclease (RNase) III involved in RNA-mediated post- transcriptional gene silencing (PTGS).	Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana.2005 · DOI: 10.1007/s11103-004-6853-5 Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs.2005 · DOI: 10.1016/j.cub.2005.07.024 The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis.2006 · DOI: 10.1261/rna.2146906 A novel class of bacteria-induced small RNAs in Arabidopsis.2007 · DOI: 10.1101/gad.1595107 The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1.2008 · DOI: 10.1073/pnas.0803356105 Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1.2008 · DOI: 10.1073/pnas.0805760105
`At5g45150`	Ribonuclease that cleaves double-stranded RNA (dsRNA).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0271300`	Cleaves double-stranded RNA (dsRNA).	No verified direct reference in this release
`Os03g0121800`	Involved in the RNA silencing pathway.	Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice.2005 · DOI: 10.1104/pp.105.063420 Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs).2008 · DOI: 10.1073/pnas.0708743105

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000911	cytokinesis by cell plate formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.345; coverage=90.39; evalue=9.54e-54; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006364	rRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.06; coverage=87.013; evalue=2.51e-109; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006396	RNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.345; coverage=90.39; evalue=9.54e-54; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009616	RNAi-mediated antiviral immune response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.345; coverage=90.39; evalue=9.54e-54; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009880	embryonic pattern specification	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.345; coverage=90.39; evalue=9.54e-54; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.345; coverage=90.39; evalue=9.54e-54; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010228	vegetative to reproductive phase transition of meristem	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.345; coverage=90.39; evalue=9.54e-54; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010267	ta-siRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.345; coverage=90.39; evalue=9.54e-54; UniProt GO evidence=IMP:FlyBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010599	lsiRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.345; coverage=90.39; evalue=9.54e-54; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030422	siRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.06; coverage=87.013; evalue=2.51e-109; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031053	primary miRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.345; coverage=90.39; evalue=9.54e-54; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0035196	miRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.349; coverage=86.234; evalue=4.4e-56; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0035279	miRNA-mediated gene silencing by mRNA destabilization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.345; coverage=90.39; evalue=9.54e-54; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048317	seed morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.345; coverage=90.39; evalue=9.54e-54; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000034	regulation of seed maturation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.345; coverage=90.39; evalue=9.54e-54; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.06; coverage=87.013; evalue=2.51e-109; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.06; coverage=87.013; evalue=2.51e-109; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.06; coverage=87.013; evalue=2.51e-109; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010445	nuclear dicing body	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.345; coverage=90.39; evalue=9.54e-54; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.345; coverage=90.39; evalue=9.54e-54; UniProt GO evidence=IDA:DisProt	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.06; coverage=87.013; evalue=2.51e-109; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003725	double-stranded RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.345; coverage=90.39; evalue=9.54e-54; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004386	helicase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.349; coverage=86.234; evalue=4.4e-56; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004525	ribonuclease III activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.06; coverage=87.013; evalue=2.51e-109; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.349; coverage=86.234; evalue=4.4e-56; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046872	metal ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.06; coverage=87.013; evalue=2.51e-109; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G01040	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.345; coverage=90.39; evalue=9.54e-54	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G20420	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.06; coverage=87.013; evalue=2.51e-109	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0121800	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.349; coverage=86.234; evalue=4.4e-56	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os05g0271300	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.203; coverage=74.286; evalue=2.62e-75	UniProtKB/Swiss-Prot DAT 2026 current_release