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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_037142
Query referenceOH1004
LocationChr08:53948783-53953248 (-)
DescriptionSimilar to ASY3: Meiosis-specific protein ASY3 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_037142 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 7 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g46980 Required for normal meiosis in male and female gametophytes.
Inter-homolog crossing-over and synapsis in Arabidopsis meiosis are dependent on the chromosome axis protein AtASY3.2012 · DOI: 10.1371/journal.pgen.1002507

Rice

Reference gene IDPossible functionPapers / DOI
Os10g0405500 Plays a crucial role in homologous chromosome pairing and synapsis in meiosis.
Mutation of the rice gene PAIR3 results in lack of bivalent formation in meiosis.2009 · DOI: 10.1111/j.1365-313x.2009.03870.x
PAIR3, an axis-associated protein, is essential for the recruitment of recombination elements onto meiotic chromosomes in rice.2011 · DOI: 10.1091/mbc.e10-08-0667

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0007129homologous chromosome pairing at meiosisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.244; coverage=18.594; evalue=8.7e-31; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051321meiotic cell cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.503; coverage=21.429; evalue=4.7e-41; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090173regulation of synaptonemal complex assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.503; coverage=21.429; evalue=4.7e-41; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.503; coverage=21.429; evalue=4.7e-41; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005694chromosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.503; coverage=21.429; evalue=4.7e-41; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.503; coverage=21.429; evalue=4.7e-41; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.503; coverage=21.429; evalue=4.7e-41; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G46980KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.503; coverage=21.429; evalue=4.7e-41UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os10g0405500KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.244; coverage=18.594; evalue=8.7e-31UniProtKB/Swiss-Prot DAT 2026 current_release