Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_037008 |
|---|---|
| Query reference | OH1004 |
| Location | Chr08:51604418-51610715 (+) |
| Description | Similar to MTERF4: Transcription termination factor MTERF4%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_037008 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 38 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g02990 |
Transcription termination factor required for processing and steady-state levels of plastid transcripts. | No verified direct reference in this release |
At1g03360 |
Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing, maturation and degradation events. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os05g0404000 |
Transcription termination factor required for processing and steady-state levels of plastid transcripts. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000460 | maturation of 5.8S rRNA | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.823; coverage=35.698; evalue=7.12e-156; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000467 | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.823; coverage=35.698; evalue=7.12e-156; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000956 | nuclear-transcribed mRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.823; coverage=35.698; evalue=7.12e-156; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006353 | DNA-templated transcription termination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.423; coverage=58.559; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006396 | RNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.048; coverage=25.788; evalue=5.96e-54; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008380 | RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.423; coverage=58.559; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009793 | embryo development ending in seed dormancy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.423; coverage=58.559; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032502 | developmental process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.423; coverage=58.559; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034475 | U4 snRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.823; coverage=35.698; evalue=7.12e-156; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042254 | ribosome biogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.358; coverage=49.662; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042793 | plastid transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.423; coverage=58.559; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042794 | plastid rRNA transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.423; coverage=58.559; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060149 | negative regulation of post-transcriptional gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.823; coverage=35.698; evalue=7.12e-156; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070478 | nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.048; coverage=25.788; evalue=5.96e-54; UniProt GO evidence=ISO:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070481 | nuclear-transcribed mRNA catabolic process, non-stop decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.048; coverage=25.788; evalue=5.96e-54; UniProt GO evidence=ISO:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070651 | nonfunctional rRNA decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.048; coverage=25.788; evalue=5.96e-54; UniProt GO evidence=ISO:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071028 | nuclear mRNA surveillance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.048; coverage=25.788; evalue=5.96e-54; UniProt GO evidence=TAS:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071034 | CUT catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.823; coverage=35.698; evalue=7.12e-156; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071035 | nuclear polyadenylation-dependent rRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.823; coverage=35.698; evalue=7.12e-156; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071038 | TRAMP-dependent tRNA surveillance pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.823; coverage=35.698; evalue=7.12e-156; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071042 | nuclear polyadenylation-dependent mRNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.048; coverage=25.788; evalue=5.96e-54; UniProt GO evidence=ISO:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071051 | poly(A)-dependent snoRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.823; coverage=35.698; evalue=7.12e-156; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000176 | nuclear exosome (RNase complex) | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.823; coverage=35.698; evalue=7.12e-156; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000177 | cytoplasmic exosome (RNase complex) | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.823; coverage=35.698; evalue=7.12e-156; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000178 | exosome (RNase complex) | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.048; coverage=25.788; evalue=5.96e-54; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.048; coverage=25.788; evalue=5.96e-54; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.048; coverage=25.788; evalue=5.96e-54; UniProt GO evidence=HDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.823; coverage=35.698; evalue=7.12e-156; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.823; coverage=35.698; evalue=7.12e-156; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.823; coverage=35.698; evalue=7.12e-156; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.423; coverage=58.559; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.048; coverage=25.788; evalue=5.96e-54; UniProt GO evidence=HDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.423; coverage=58.559; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009536 | plastid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.423; coverage=58.559; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=65.783; coverage=46.734; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003676 | nucleic acid binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.358; coverage=49.662; evalue=0.0; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.823; coverage=35.698; evalue=7.12e-156; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.423; coverage=58.559; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G03360 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=67.823; coverage=35.698; evalue=7.12e-156 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G02990 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.423; coverage=58.559; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os05g0404000 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=65.783; coverage=46.734; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2541813 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.048; coverage=25.788; evalue=5.96e-54 | UniProtKB/Swiss-Prot DAT 2026 current_release |