Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_036989 |
|---|---|
| Query reference | OH1004 |
| Location | Chr08:51275062-51277145 (-) |
| Description | Similar to SMD1B: Small nuclear ribonucleoprotein SmD1b (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_036989 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 41 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g02840 |
Involved in splicing regulation. | |
At3g07590 |
Involved in splicing regulation. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000387 | spliceosomal snRNP assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000395 | mRNA 5'-splice site recognition | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=72.527; coverage=79.825; evalue=4.49e-42; UniProt GO evidence=IC:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000398 | mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.429; coverage=79.825; evalue=6.64e-43; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008380 | RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035194 | regulatory ncRNA-mediated post-transcriptional gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043484 | regulation of RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045292 | mRNA cis splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=72.527; coverage=79.825; evalue=4.49e-42; UniProt GO evidence=EXP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000243 | commitment complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000325 | plant-type vacuole | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005681 | spliceosomal complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.429; coverage=79.825; evalue=6.64e-43; UniProt GO evidence=ISS:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005682 | U5 snRNP | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005684 | U2-type spliceosomal complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=73.077; coverage=91.228; evalue=6.92e-42; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005685 | U1 snRNP | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005686 | U2 snRNP | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005687 | U4 snRNP | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005689 | U12-type spliceosomal complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=73.077; coverage=91.228; evalue=6.92e-42; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=73.077; coverage=91.228; evalue=6.92e-42; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.429; coverage=79.825; evalue=6.64e-43; UniProt GO evidence=HDA:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030532 | small nuclear ribonucleoprotein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.429; coverage=79.825; evalue=6.64e-43; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034693 | U11/U12 snRNP | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=73.077; coverage=91.228; evalue=6.92e-42; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034709 | methylosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=73.077; coverage=91.228; evalue=6.92e-42; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034715 | pICln-Sm protein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034719 | SMN-Sm protein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046540 | U4/U6 x U5 tri-snRNP complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=72.527; coverage=79.825; evalue=4.49e-42; UniProt GO evidence=ISS:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071004 | U2-type prespliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=72.527; coverage=79.825; evalue=4.49e-42; UniProt GO evidence=ISO:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071005 | U2-type precatalytic spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=73.077; coverage=91.228; evalue=6.92e-42; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071006 | U2-type catalytic step 1 spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=73.077; coverage=91.228; evalue=6.92e-42; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071007 | U2-type catalytic step 2 spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=73.077; coverage=91.228; evalue=6.92e-42; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071011 | precatalytic spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071013 | catalytic step 2 spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071014 | post-mRNA release spliceosomal complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=72.527; coverage=79.825; evalue=4.49e-42; UniProt GO evidence=IDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071016 | U12-type precatalytic spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=73.077; coverage=91.228; evalue=6.92e-42; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071018 | U12-type catalytic step 2 spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=73.077; coverage=91.228; evalue=6.92e-42; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071020 | post-spliceosomal complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=73.077; coverage=91.228; evalue=6.92e-42; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097526 | spliceosomal tri-snRNP complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990446 | U1 snRNP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=73.077; coverage=91.228; evalue=6.92e-42; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G07590 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=90.816; coverage=85.965; evalue=6.13e-60 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G02840 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.708; coverage=84.211; evalue=2.66e-60 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dme:Dmel_CG10753 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.429; coverage=79.825; evalue=6.64e-43 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:20641 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=73.077; coverage=91.228; evalue=6.92e-42 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2542690 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=72.527; coverage=79.825; evalue=4.49e-42 | UniProtKB/Swiss-Prot DAT 2026 current_release |