Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_036859 |
|---|---|
| Query reference | OH1004 |
| Location | Chr08:49201707-49206802 (+) |
| Description | Similar to CHR8: Protein CHROMATIN REMODELING 8 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_036859 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 48 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g18760 |
Essential factor involved in transcription-coupled nucleotide excision repair (TCR) which allows RNA polymerase II-blocking lesions to be rapidly removed from the transcribed strand of active genes. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os01g0102800 |
Essential factor involved in transcription-coupled nucleotide excision repair (TCR) which allows RNA polymerase II-blocking lesions to be rapidly removed from the transcribed strand of active genes. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000012 | single strand break repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000077 | DNA damage checkpoint signaling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.577; coverage=102.869; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006283 | transcription-coupled nucleotide-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.577; coverage=102.869; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006284 | base-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006289 | nucleotide-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.552; coverage=71.139; evalue=0.0; UniProt GO evidence=IGI:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006338 | chromatin remodeling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.577; coverage=102.869; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.552; coverage=71.139; evalue=0.0; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006366 | transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006974 | DNA damage response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.577; coverage=102.869; evalue=0.0; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006979 | response to oxidative stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010332 | response to gamma radiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.577; coverage=102.869; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032784 | regulation of DNA-templated transcription elongation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032786 | positive regulation of DNA-templated transcription, elongation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034243 | regulation of transcription elongation by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042262 | DNA protection | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045739 | positive regulation of DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045943 | positive regulation of transcription by RNA polymerase I | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045945 | positive regulation of transcription by RNA polymerase III | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061635 | regulation of protein complex stability | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.552; coverage=71.139; evalue=0.0; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071168 | protein localization to chromatin | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IDA:UniProt | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097680 | double-strand break repair via classical nonhomologous end joining | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905168 | positive regulation of double-strand break repair via homologous recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2001033 | negative regulation of double-strand break repair via nonhomologous end joining | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.552; coverage=71.139; evalue=0.0; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.577; coverage=102.869; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.552; coverage=71.139; evalue=0.0; UniProt GO evidence=HDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=49.309; coverage=61.097; evalue=0.0; UniProt GO evidence=HDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008023 | transcription elongation factor complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016604 | nuclear body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090734 | site of DNA damage | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.577; coverage=102.869; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003678 | DNA helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.552; coverage=71.139; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004386 | helicase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.577; coverage=102.869; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.577; coverage=102.869; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008094 | ATP-dependent activity, acting on DNA | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.552; coverage=71.139; evalue=0.0; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016787 | hydrolase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.577; coverage=102.869; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016887 | ATP hydrolysis activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=49.309; coverage=61.097; evalue=0.0; UniProt GO evidence=IC:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030296 | protein tyrosine kinase activator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070063 | RNA polymerase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140463 | chromatin-protein adaptor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140658 | ATP-dependent chromatin remodeler activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.577; coverage=102.869; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140664 | ATP-dependent DNA damage sensor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G18760 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.577; coverage=102.869; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os01g0102800 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.743; coverage=104.473; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:2074 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.038; coverage=52.658; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | osa:4326441 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.743; coverage=104.473; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | sce:YJR035W | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.552; coverage=71.139; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2539473 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=49.309; coverage=61.097; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release |