Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_036628 |
|---|---|
| Query reference | OH1004 |
| Location | Chr08:45669959-45672354 (-) |
| Description | Similar to At2g30320: Putative tRNA pseudouridine synthase (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_036628 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 24 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At2g30320 |
Putative tRNA pseudouridine synthase. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.193; coverage=66.023; evalue=1.84e-19; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008380 | RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=22.599; coverage=68.34; evalue=8.51e-19; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031119 | tRNA pseudouridine synthesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.154; coverage=85.328; evalue=1.89e-126; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031120 | snRNA pseudouridine synthesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.193; coverage=66.023; evalue=1.84e-19; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070902 | mitochondrial tRNA pseudouridine synthesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=22.599; coverage=68.34; evalue=8.51e-19; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990481 | mRNA pseudouridine synthesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.154; coverage=85.328; evalue=1.89e-126; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.154; coverage=85.328; evalue=1.89e-126; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=22.599; coverage=68.34; evalue=8.51e-19; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005667 | transcription regulator complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=22.599; coverage=68.34; evalue=8.51e-19; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=22.599; coverage=68.34; evalue=8.51e-19; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=22.599; coverage=68.34; evalue=8.51e-19; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=22.599; coverage=68.34; evalue=8.51e-19; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005759 | mitochondrial matrix | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=22.599; coverage=68.34; evalue=8.51e-19; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000049 | tRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=22.599; coverage=68.34; evalue=8.51e-19; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0002153 | steroid receptor RNA activator RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=22.599; coverage=68.34; evalue=8.51e-19; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=22.599; coverage=68.34; evalue=8.51e-19; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003713 | transcription coactivator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=22.599; coverage=68.34; evalue=8.51e-19; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.154; coverage=85.328; evalue=1.89e-126; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009982 | pseudouridine synthase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.154; coverage=85.328; evalue=1.89e-126; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.193; coverage=66.023; evalue=1.84e-19; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0106029 | tRNA pseudouridine synthase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.154; coverage=85.328; evalue=1.89e-126; UniProt GO evidence=IEA:RHEA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0106032 | snRNA pseudouridine synthase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.193; coverage=66.023; evalue=1.84e-19; UniProt GO evidence=IEA:RHEA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0160147 | tRNA pseudouridine(38-40) synthase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=22.599; coverage=68.34; evalue=8.51e-19; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0160153 | mitochondrial tRNA pseudouridine(27/28) synthase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=22.599; coverage=68.34; evalue=8.51e-19; UniProt GO evidence=IMP:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G30320 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.154; coverage=85.328; evalue=1.89e-126 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | cgr:2887466 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=27.299; coverage=67.181; evalue=6.58e-16 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:80324 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=22.599; coverage=68.34; evalue=8.51e-19 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | kla:KLLA0_B02244g | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=27.193; coverage=66.023; evalue=1.84e-19 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | sce:YGL063W | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.603; coverage=60.232; evalue=1.88e-16 | UniProtKB/Swiss-Prot DAT 2026 current_release |