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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_036462
Query referenceOH1004
LocationChr08:42575097-42577147 (+)
DescriptionSimilar to MBD7: Methyl-CpG-binding domain-containing protein 7 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_036462 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 11 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g59800 Transcriptional regulator that binds CpG islands in promoters where the DNA is methylated at position 5 of cytosine within CpG dinucleotides.
Characterization of Arabidopsis thaliana methyl-CpG-binding domain (MBD) proteins.2003 · DOI: 10.1046/j.1365-313x.2003.01756.x
The three methyl-CpG-binding domains of AtMBD7 control its subnuclear localization and mobility.2008 · DOI: 10.1074/jbc.m706221200
Methyl-CpG-binding domain protein MBD7 is required for active DNA demethylation in Arabidopsis.2015 · DOI: 10.1104/pp.114.252106
The methyl-CpG-binding protein MBD7 facilitates active DNA demethylation to limit DNA hyper-methylation and transcriptional gene silencing.2015 · DOI: 10.1016/j.molcel.2015.01.009
At5g59380 Transcriptional regulator that binds CpG, CpNpN and CpNpG (N is A, T, or C) islands in promoters regardless the DNA methylation status.
Characterization of Arabidopsis thaliana methyl-CpG-binding domain (MBD) proteins.2003 · DOI: 10.1046/j.1365-313x.2003.01756.x
Arabidopsis MBD proteins show different binding specificities and nuclear localization.2003 · DOI: 10.1023/b:plan.0000019118.56822.a9
Multimegabase silencing in nucleolar dominance involves siRNA-directed DNA methylation and specific methylcytosine-binding proteins.2008 · DOI: 10.1016/j.molcel.2008.11.009
AtMBD6, a methyl CpG binding domain protein, maintains gene silencing in Arabidopsis by interacting with RNA binding proteins.2017 · DOI: 10.1007/s12038-016-9658-1

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.839; coverage=76.471; evalue=1.49e-19; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031047regulatory ncRNA-mediated gene silencingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.353; coverage=38.095; evalue=4.12e-08; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000792heterochromatinCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.353; coverage=38.095; evalue=4.12e-08; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.839; coverage=76.471; evalue=1.49e-19; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005694chromosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.839; coverage=76.471; evalue=1.49e-19; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005731nucleolus organizer regionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.353; coverage=38.095; evalue=4.12e-08; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009536plastidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.353; coverage=38.095; evalue=4.12e-08; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010369chromocenterCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.839; coverage=76.471; evalue=1.49e-19; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010370perinucleolar chromocenterCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.353; coverage=38.095; evalue=4.12e-08; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008327methyl-CpG bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.839; coverage=76.471; evalue=1.49e-19; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019899enzyme bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.839; coverage=76.471; evalue=1.49e-19; UniProt GO evidence=IPI:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G59380KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.353; coverage=38.095; evalue=4.12e-08UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G59800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.839; coverage=76.471; evalue=1.49e-19UniProtKB/Swiss-Prot DAT 2026 current_release