Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_035474 |
|---|---|
| Query reference | OH1004 |
| Location | Chr08:23285705-23288527 (+) |
| Description | Similar to ARP1: Probable RNA-binding protein ARP1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_035474 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 29 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g54770 |
Probable RNA-binding protein involved in the regulation of abscisic acid (ABA) response during seed germination. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.417; coverage=31.068; evalue=1.23e-32; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.417; coverage=31.068; evalue=1.23e-32; UniProt GO evidence=IMP:ZFIN | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006974 | DNA damage response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.417; coverage=31.068; evalue=1.23e-32; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008380 | RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.417; coverage=31.068; evalue=1.23e-32; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009414 | response to water deprivation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.692; coverage=33.657; evalue=5.58e-36; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009651 | response to salt stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.692; coverage=33.657; evalue=5.58e-36; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009737 | response to abscisic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.692; coverage=33.657; evalue=5.58e-36; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010029 | regulation of seed germination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.692; coverage=33.657; evalue=5.58e-36; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030154 | cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.229; coverage=62.136; evalue=2.59e-32; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043484 | regulation of RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.229; coverage=62.136; evalue=2.59e-32; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043488 | regulation of mRNA stability | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.417; coverage=31.068; evalue=1.23e-32; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048255 | mRNA stabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.417; coverage=31.068; evalue=1.23e-32; UniProt GO evidence=IMP:ZFIN | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0060212 | negative regulation of nuclear-transcribed mRNA poly(A) tail shortening | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.417; coverage=31.068; evalue=1.23e-32; UniProt GO evidence=IMP:ZFIN | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061157 | mRNA destabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.417; coverage=31.068; evalue=1.23e-32; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061158 | 3'-UTR-mediated mRNA destabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.417; coverage=31.068; evalue=1.23e-32; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905870 | positive regulation of 3'-UTR-mediated mRNA stabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.417; coverage=31.068; evalue=1.23e-32; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000738 | positive regulation of stem cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.417; coverage=31.068; evalue=1.23e-32; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000766 | negative regulation of cytoplasmic translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.417; coverage=31.068; evalue=1.23e-32; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.692; coverage=33.657; evalue=5.58e-36; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=60.417; coverage=31.068; evalue=3.47e-32; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.692; coverage=33.657; evalue=5.58e-36; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.417; coverage=31.068; evalue=1.23e-32; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.417; coverage=31.068; evalue=1.23e-32; UniProt GO evidence=IDA:ZFIN | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.692; coverage=33.657; evalue=5.58e-36; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003730 | mRNA 3'-UTR binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.417; coverage=31.068; evalue=1.23e-32; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035925 | mRNA 3'-UTR AU-rich region binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.417; coverage=31.068; evalue=1.23e-32; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097157 | pre-mRNA intronic binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.417; coverage=31.068; evalue=1.23e-32; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990715 | mRNA CDS binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.417; coverage=31.068; evalue=1.23e-32; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990825 | sequence-specific mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.417; coverage=31.068; evalue=1.23e-32; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G54770 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.692; coverage=33.657; evalue=5.58e-36 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dre:405801 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=60.417; coverage=31.068; evalue=1.23e-32 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | gga:768866 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.229; coverage=62.136; evalue=2.59e-32 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:221662 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=60.417; coverage=31.068; evalue=3.47e-32 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | xla:379265 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=59.375; coverage=31.068; evalue=2.79e-32 | UniProtKB/Swiss-Prot DAT 2026 current_release |