Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_035394 |
|---|---|
| Query reference | OH1004 |
| Location | Chr08:21852850-21856028 (-) |
| Description | Similar to GIF3: GRF1-interacting factor 3 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_035394 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 22 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g00850 |
Transcription coactivator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues (By similarity). | |
At1g01160 |
Transcription coactivator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues (By similarity). |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os03g0733600 |
Transcription coactivator that plays a role in the regulation of meristematic function in leaves, stems and inflorescences. |
The OsmiR396c-OsGRF4-OsGIF1 regulatory module determines grain size and yield in rice.2016 · DOI: 10.1111/pbi.12569
|
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006338 | chromatin remodeling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.308; coverage=18.106; evalue=3.39e-11; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=28.969; evalue=1.78e-24; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.308; coverage=18.106; evalue=3.39e-11; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008283 | cell population proliferation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.065; coverage=43.175; evalue=1.42e-16; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008284 | positive regulation of cell population proliferation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.308; coverage=18.106; evalue=3.39e-11; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010582 | floral meristem determinacy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.065; coverage=43.175; evalue=1.42e-16; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0040029 | epigenetic regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=28.969; evalue=1.78e-24; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045596 | negative regulation of cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.308; coverage=18.106; evalue=3.39e-11; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045787 | positive regulation of cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.806; coverage=17.27; evalue=3.46e-21; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.515; coverage=27.019; evalue=2.02e-18; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.308; coverage=18.106; evalue=3.39e-11; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048316 | seed development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.515; coverage=27.019; evalue=2.02e-18; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048366 | leaf development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=28.969; evalue=1.78e-24; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051301 | cell division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=28.969; evalue=1.78e-24; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1902459 | positive regulation of stem cell population maintenance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.308; coverage=18.106; evalue=3.39e-11; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.308; coverage=18.106; evalue=3.39e-11; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=28.969; evalue=1.78e-24; UniProt GO evidence=IPI:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.308; coverage=18.106; evalue=3.39e-11; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.515; coverage=27.019; evalue=2.02e-18; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015630 | microtubule cytoskeleton | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.308; coverage=18.106; evalue=3.39e-11; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016514 | SWI/SNF complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.308; coverage=18.106; evalue=3.39e-11; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003713 | transcription coactivator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=28.969; evalue=1.78e-24; UniProt GO evidence=ISS:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G01160 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=75.806; coverage=17.27; evalue=3.46e-21 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G00850 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=61.538; coverage=28.969; evalue=1.78e-24 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os03g0733600 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=50.515; coverage=27.019; evalue=2.02e-18 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:6760 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=52.308; coverage=18.106; evalue=3.39e-11 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | zma:100101544 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=38.065; coverage=43.175; evalue=1.42e-16 | UniProtKB/Swiss-Prot DAT 2026 current_release |