Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_035097`
Query reference	OH1004
Location	Chr08:14179785-14180834 (+)
Description	Similar to ABI4: Ethylene-responsive transcription factor ABI4 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_035097 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 27 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g40220`	Transcription regulator that probably binds to the GCC-box pathogenesis-related promoter element.	Genetic analysis of salt-tolerant mutants in Arabidopsis thaliana.2000 · DOI: 10.1093/genetics/154.1.421 Analysis of Arabidopsis glucose insensitive mutants, gin5 and gin6, reveals a central role of the plant hormone ABA in the regulation of plant vegetative development by sugar.2000 · PMID: 10950871 The Arabidopsis SUCROSE UNCOUPLED-6 gene is identical to ABSCISIC ACID INSENSITIVE-4: involvement of abscisic acid in sugar responses.2000 · DOI: 10.1046/j.1365-313x.2000.00822.x The Arabidopsis sugar-insensitive mutants sis4 and sis5 are defective in abscisic acid synthesis and response.2000 · DOI: 10.1046/j.1365-313x.2000.00833.x Regulation and function of the Arabidopsis ABA-insensitive4 gene in seed and abscisic acid response signaling networks.2000 · DOI: 10.1104/pp.124.4.1752 Plastid redox state and sugars: interactive regulators of nuclear-encoded photosynthetic gene expression.2001 · DOI: 10.1073/pnas.98.4.2047 ABA plays a central role in mediating the regulatory effects of nitrate on root branching in Arabidopsis.2001 · DOI: 10.1046/j.1365-313x.2001.01185.x Mobilization of seed storage lipid by Arabidopsis seedlings is retarded in the presence of exogenous sugars.2002 · DOI: 10.1186/1471-2229-2-4 A screen for genes that function in abscisic acid signaling in Arabidopsis thaliana.2002 · DOI: 10.1093/genetics/161.3.1247 Regulatory networks in seeds integrating developmental, abscisic acid, sugar, and light signaling.2003 · DOI: 10.1104/pp.011916 Mechanisms of glucose signaling during germination of Arabidopsis.2003 · DOI: 10.1104/pp.103.020347 Beta-amino-butyric acid-induced resistance against necrotrophic pathogens is based on ABA-dependent priming for callose.2004 · DOI: 10.1111/j.1365-313x.2004.02028.x Interactions of abscisic acid and sugar signalling in the regulation of leaf senescence.2004 · DOI: 10.1007/s00425-004-1279-5 Oxalate production by Sclerotinia sclerotiorum deregulates guard cells during infection.2004 · DOI: 10.1104/pp.104.049650 Sugar and ABA responsiveness of a minimal RBCS light-responsive unit is mediated by direct binding of ABI4.2005 · DOI: 10.1111/j.1365-313x.2005.02468.x Role of abscisic acid (ABA) and Arabidopsis thaliana ABA-insensitive loci in low water potential-induced ABA and proline accumulation.2006 · DOI: 10.1093/jxb/erj026 Arabidopsis ABA INSENSITIVE4 regulates lipid mobilization in the embryo and reveals repression of seed germination by the endosperm.2006 · DOI: 10.1105/tpc.106.041277 ABI4 mediates the effects of exogenous trehalose on Arabidopsis growth and starch breakdown.2007 · DOI: 10.1007/s11103-006-9082-2 Sucrose control of phytochrome A signaling in Arabidopsis.1997 · DOI: 10.1105/tpc.9.4.583 An Arabidopsis mutant showing reduced feedback inhibition of photosynthesis.1997 · DOI: 10.1046/j.1365-313x.1997.12051011.x The Arabidopsis abscisic acid response locus ABI4 encodes an APETALA 2 domain protein.1998 · DOI: 10.1105/tpc.10.6.1043
`At3g57600`	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'.	No verified direct reference in this release
`At5g18450`	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0565200`	Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE).	No verified direct reference in this release
`Os05g0351200`	Probable transcription regulator that binds to cis-responsive elements of genes involved in stress response.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0005983	starch catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=NAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006950	response to stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006952	defense response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006970	response to osmotic stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009414	response to water deprivation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009738	abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009744	response to sucrose	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009749	response to glucose	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009873	ethylene-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010119	regulation of stomatal movement	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010182	sugar mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010353	response to trehalose	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010449	root meristem growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010896	regulation of triglyceride catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031930	mitochondria-nucleus signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0032880	regulation of protein localization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048316	seed development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048527	lateral root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000082	regulation of L-ascorbic acid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G40220	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.667; coverage=85.96; evalue=2.12e-41	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G57600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=62.651; coverage=23.782; evalue=5.48e-26	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G18450	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=57.143; coverage=28.08; evalue=1.91e-25	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os05g0351200	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=80.282; coverage=20.344; evalue=8.66e-25	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os08g0565200	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=65.385; coverage=22.35; evalue=7.04e-26	UniProtKB/Swiss-Prot DAT 2026 current_release