Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_034120 |
|---|---|
| Query reference | OH1004 |
| Location | Chr07:83082779-83089392 (+) |
| Description | Similar to SMC5: Structural maintenance of chromosomes protein 5 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_034120 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 35 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g15920 |
Core component of the SMC5-SMC6 complex that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000722 | telomere maintenance via recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000724 | double-strand break repair via homologous recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.067; coverage=99.144; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006974 | DNA damage response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007059 | chromosome segregation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007062 | sister chromatid cohesion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.067; coverage=99.144; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016925 | protein sumoylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.215; coverage=101.808; evalue=1.69e-148; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0018393 | internal peptidyl-lysine acetylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019827 | stem cell population maintenance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030261 | chromosome condensation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032204 | regulation of telomere maintenance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.215; coverage=101.808; evalue=1.69e-148; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034184 | positive regulation of maintenance of mitotic sister chromatid cohesion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044772 | mitotic cell cycle phase transition | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044828 | host-mediated suppression of viral genome replication | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051301 | cell division | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051984 | positive regulation of chromosome segregation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071459 | protein localization to chromosome, centromeric region | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090398 | cellular senescence | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140588 | chromatin looping | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.215; coverage=101.808; evalue=1.69e-148; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000775 | chromosome, centromeric region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000781 | chromosome, telomeric region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=IMP:BHF-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000803 | sex chromosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.067; coverage=99.144; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.215; coverage=101.808; evalue=1.69e-148; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.067; coverage=99.144; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009506 | plasmodesma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.067; coverage=99.144; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030054 | cell junction | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030915 | Smc5-Smc6 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.067; coverage=99.144; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035061 | interchromatin granule | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035861 | site of double-strand break | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000217 | DNA secondary structure binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003697 | single-stranded DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.067; coverage=99.144; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.067; coverage=99.144; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016887 | ATP hydrolysis activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.215; coverage=101.808; evalue=1.69e-148; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G15920 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=65.067; coverage=99.144; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dre:566749 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=31.389; coverage=102.759; evalue=3.42e-146 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:23137 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.215; coverage=101.808; evalue=1.69e-148 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:226026 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.968; coverage=103.235; evalue=1.76e-152 | UniProtKB/Swiss-Prot DAT 2026 current_release |