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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_033679
Query referenceOH1004
LocationChr07:52899791-52901832 (+)
DescriptionSimilar to LHP1: Chromo domain protein LHP1 (Solanum lycopersicum OX%3D4081)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_033679 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 64 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g17690 Structural component of heterochromatin involved in gene repression, including several floral homeotic genes and FLT that regulates flowering time.
Mutations in LIKE HETEROCHROMATIN PROTEIN 1 affect flowering time and plant architecture in Arabidopsis.2001 · DOI: 10.1242/dev.128.23.4847
Arabidopsis TERMINAL FLOWER 2 gene encodes a heterochromatin protein 1 homolog and represses both FLOWERING LOCUS T to regulate flowering time and several floral homeotic genes.2003 · DOI: 10.1093/pcp/pcg091
Characterization of the Arabidopsis TU8 glucosinolate mutation, an allele of TERMINAL FLOWER2.2004 · DOI: 10.1023/b:plan.0000040897.49151.98
LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC.2006 · DOI: 10.1073/pnas.0507427103
Epigenetic maintenance of the vernalized state in Arabidopsis thaliana requires LIKE HETEROCHROMATIN PROTEIN 1.2006 · DOI: 10.1038/ng1795
Polycomb silencing of KNOX genes confines shoot stem cell niches in Arabidopsis.2008 · DOI: 10.1016/j.cub.2008.11.019
The Arabidopsis hnRNP-Q Protein LIF2 and the PRC1 Subunit LHP1 Function in Concert to Regulate the Transcription of Stress-Responsive Genes.2016 · DOI: 10.1105/tpc.16.00244
The TERMINAL FLOWER2 (TFL2) gene controls the reproductive transition and meristem identity in Arabidopsis thaliana.1998 · DOI: 10.1093/genetics/149.2.597

Rice

Reference gene IDPossible functionPapers / DOI
Os10g0324900 Structural component of heterochromatin involved in gene repression. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000278mitotic cell cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IDA:CACAOUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000723telomere maintenanceBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IMP:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006325chromatin organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.571; coverage=92.348; evalue=1.6e-54; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.308; coverage=89.182; evalue=1.14e-64; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IMP:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009648photoperiodismBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.571; coverage=92.348; evalue=1.6e-54; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009744response to sucroseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.571; coverage=92.348; evalue=1.6e-54; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009825multidimensional cell growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.571; coverage=92.348; evalue=1.6e-54; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009908flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.571; coverage=92.348; evalue=1.6e-54; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009910negative regulation of flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.571; coverage=92.348; evalue=1.6e-54; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010016shoot system morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.571; coverage=92.348; evalue=1.6e-54; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010048vernalization responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.571; coverage=92.348; evalue=1.6e-54; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030154cell differentiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.571; coverage=92.348; evalue=1.6e-54; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031507heterochromatin formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.308; coverage=89.182; evalue=1.14e-64; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031508pericentric heterochromatin formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.07; coverage=18.734; evalue=9.04e-08; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032259methylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.07; coverage=18.734; evalue=9.04e-08; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0044725epigenetic programming in the zygotic pronucleiBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.07; coverage=18.734; evalue=9.04e-08; UniProt GO evidence=IEA:EnsemblUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045814negative regulation of gene expression, epigeneticBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.308; coverage=89.182; evalue=1.14e-64; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045892negative regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.308; coverage=89.182; evalue=1.14e-64; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045893positive regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=TAS:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045944positive regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048573photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.571; coverage=92.348; evalue=1.6e-54; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051276chromosome organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IMP:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0141006transposable element silencing by piRNA-mediated heterochromatin formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IMP:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0141194siRNA-mediated heterochromatin formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IGI:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1905632protein localization to euchromatinBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IDA:CAFAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1905634regulation of protein localization to chromatinBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IMP:CAFAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1905646positive regulation of FACT complex assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IDA:CAFAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000775chromosome, centromeric regionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=NAS:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000779condensed chromosome, centromeric regionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IDA:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000781chromosome, telomeric regionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IDA:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000791euchromatinCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.571; coverage=92.348; evalue=1.6e-54; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000792heterochromatinCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.308; coverage=89.182; evalue=1.14e-64; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000793condensed chromosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IDA:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.308; coverage=89.182; evalue=1.14e-64; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005694chromosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IDA:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005700polytene chromosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IDA:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005701polytene chromosome chromocenterCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IDA:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005703polytene chromosome puffCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=TAS:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005721pericentric heterochromatinCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.07; coverage=18.734; evalue=9.04e-08; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.571; coverage=92.348; evalue=1.6e-54; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010369chromocenterCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IDA:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000182rDNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IDA:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.571; coverage=92.348; evalue=1.6e-54; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003682chromatin bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.308; coverage=89.182; evalue=1.14e-64; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003696satellite DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IDA:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.571; coverage=92.348; evalue=1.6e-54; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=NAS:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003935GTP cyclohydrolase II activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.571; coverage=92.348; evalue=1.6e-54; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.07; coverage=18.734; evalue=9.04e-08; UniProt GO evidence=IEA:EnsemblUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030544Hsp70 protein bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IDA:CAFAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030674protein-macromolecule adaptor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IDA:CAFAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042393histone bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=NAS:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042802identical protein bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.571; coverage=92.348; evalue=1.6e-54; UniProt GO evidence=IPI:IntActUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043565sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.308; coverage=89.182; evalue=1.14e-64; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0044877protein-containing complex bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IDA:CAFAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046974histone H3K9 methyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.07; coverage=18.734; evalue=9.04e-08; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070063RNA polymerase bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IDA:CAFAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0099122RNA polymerase II C-terminal domain bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07; UniProt GO evidence=IDA:CAFAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140258histone H3K14ub reader activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.07; coverage=18.734; evalue=9.04e-08; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140947histone H3K9me2 methyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.07; coverage=18.734; evalue=9.04e-08; UniProt GO evidence=IEA:RHEAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140949histone H3K9 trimethyltransferase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.07; coverage=18.734; evalue=9.04e-08; UniProt GO evidence=IEA:EnsemblUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1904047S-adenosyl-L-methionine bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.07; coverage=18.734; evalue=9.04e-08; UniProt GO evidence=IEA:EnsemblUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G17690KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.571; coverage=92.348; evalue=1.6e-54UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdme:Dmel_CG8409KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=36.585; coverage=21.636; evalue=1.33e-07UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGgga:426314KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=45.07; coverage=18.734; evalue=9.04e-08UniProtKB/Swiss-Prot DAT 2026 current_release