Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_033396 |
|---|---|
| Query reference | OH1004 |
| Location | Chr07:42702825-42707426 (+) |
| Description | Similar to LCBK1: Sphingoid long-chain bases kinase 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_033396 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 23 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g23450 |
Involved in the production of sphingolipid metabolites. | |
At4g21540 |
Involved in the production of sphingolipid metabolites. |
Involvement of sphingosine kinase in plant cell signalling.2008 · DOI: 10.1111/j.1365-313x.2008.03579.x
|
At4g21534 |
Involved in the production of sphingolipid metabolites. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006665 | sphingolipid metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.685; coverage=28.906; evalue=9.52e-30; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006672 | ceramide metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.199; coverage=100.13; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006688 | glycosphingolipid biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.877; coverage=28.516; evalue=3.61e-27; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009737 | response to abscisic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.685; coverage=28.906; evalue=9.52e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009845 | seed germination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.685; coverage=28.906; evalue=9.52e-30; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030148 | sphingolipid biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.199; coverage=100.13; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046512 | sphingosine biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.685; coverage=28.906; evalue=9.52e-30; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071215 | cellular response to abscisic acid stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.685; coverage=28.906; evalue=9.52e-30; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000325 | plant-type vacuole | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.685; coverage=28.906; evalue=9.52e-30; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.685; coverage=28.906; evalue=9.52e-30; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.685; coverage=28.906; evalue=9.52e-30; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.199; coverage=100.13; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.685; coverage=28.906; evalue=9.52e-30; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.685; coverage=28.906; evalue=9.52e-30; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009705 | plant-type vacuole membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.685; coverage=28.906; evalue=9.52e-30; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.199; coverage=100.13; evalue=0.0; UniProt GO evidence=IEA:GOC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0160281 | cytoplasmic side of trans-Golgi network membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.628; coverage=27.995; evalue=8.66e-28; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000287 | magnesium ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.628; coverage=27.995; evalue=8.66e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001727 | lipid kinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.685; coverage=28.906; evalue=9.52e-30; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001729 | ceramide kinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.199; coverage=100.13; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005524 | ATP binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.199; coverage=100.13; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008481 | sphingosine kinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.199; coverage=100.13; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070300 | phosphatidic acid binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.5; coverage=26.042; evalue=1.45e-24; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G21534 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.5; coverage=26.042; evalue=1.45e-24 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G21540 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=34.685; coverage=28.906; evalue=9.52e-30 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G23450 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.199; coverage=100.13; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:64781 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.877; coverage=28.516; evalue=3.61e-27 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:223753 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.628; coverage=27.995; evalue=8.66e-28 | UniProtKB/Swiss-Prot DAT 2026 current_release |