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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_032998
Query referenceOH1004
LocationChr07:33064444-33066066 (-)
DescriptionSimilar to FIT: Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_032998 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 12 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g28160 Transcription factor.
The essential basic helix-loop-helix protein FIT1 is required for the iron deficiency response.2004 · DOI: 10.1105/tpc.104.024315
AtbHLH29 of Arabidopsis thaliana is a functional ortholog of tomato FER involved in controlling iron acquisition in strategy I plants.2005 · DOI: 10.1038/sj.cr.7290331
At5g57150 Transcription factor bHLH35. No verified direct reference in this release
At4g29930 Transcription factor bHLH27. No verified direct reference in this release
At2g16910 Transcription factor. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0381700 Transcription factor involved in positive regulation of genes involved in strategy II iron acquisition, including genes for mugineic acid (MA) family phytosiderophores biosynthesis, and genes involved in S-adenosylmethionine cycle and iron transport.
A transcription factor OsbHLH156 regulates Strategy II iron acquisition through localising IRO2 to the nucleus in rice.2020 · DOI: 10.1111/nph.16232

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.833; coverage=94.26; evalue=1.43e-74; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.833; coverage=94.26; evalue=1.43e-74; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009555pollen developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.263; coverage=45.921; evalue=9.88e-17; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010039response to iron ionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.833; coverage=94.26; evalue=1.43e-74; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0034756regulation of iron ion transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.833; coverage=94.26; evalue=1.43e-74; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048658anther wall tapetum developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.263; coverage=45.921; evalue=9.88e-17; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.833; coverage=94.26; evalue=1.43e-74; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000978RNA polymerase II cis-regulatory region sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.263; coverage=45.921; evalue=9.88e-17; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003682chromatin bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.263; coverage=45.921; evalue=9.88e-17; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.833; coverage=94.26; evalue=1.43e-74; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043565sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.833; coverage=94.26; evalue=1.43e-74; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046983protein dimerization activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.833; coverage=94.26; evalue=1.43e-74; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G16910KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.263; coverage=45.921; evalue=9.88e-17UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G28160KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=45.833; coverage=94.26; evalue=1.43e-74UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G29930KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.542; coverage=61.329; evalue=2.22e-18UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G57150KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.898; coverage=53.474; evalue=6.45e-20UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:107276663KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.953; coverage=64.955; evalue=5.08e-30UniProtKB/Swiss-Prot DAT 2026 current_release