Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_032779 |
|---|---|
| Query reference | OH1004 |
| Location | Chr07:29155333-29157924 (-) |
| Description | Similar to LIF2: Heterogeneous nuclear ribonucleoprotein Q (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_032779 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 52 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g00830 |
Transcriptional activator that binds DNA on GAGA-like motif and 5'-(C/G)ACGTG(G/T)C(A/G)-3' consensus motif in the promoters of target genes. |
Control of flowering and cell fate by LIF2, an RNA binding partner of the polycomb complex component LHP1.2011 · DOI: 10.1371/journal.pone.0016592
|
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000398 | mRNA splicing, via spliceosome | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.378; coverage=58.601; evalue=3.92e-16; UniProt GO evidence=IC:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.811; coverage=49.271; evalue=4.56e-28; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006396 | RNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.378; coverage=58.601; evalue=3.92e-16; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.568; coverage=39.504; evalue=1.82e-16; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007623 | circadian rhythm | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.641; coverage=39.796; evalue=5.06e-16; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008380 | RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.568; coverage=39.504; evalue=1.82e-16; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009617 | response to bacterium | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.811; coverage=49.271; evalue=4.56e-28; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009909 | regulation of flower development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.811; coverage=49.271; evalue=4.56e-28; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010439 | regulation of glucosinolate biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.811; coverage=49.271; evalue=4.56e-28; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010468 | regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.811; coverage=49.271; evalue=4.56e-28; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016556 | mRNA modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0017148 | negative regulation of translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0040029 | epigenetic regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.811; coverage=49.271; evalue=4.56e-28; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042742 | defense response to bacterium | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.811; coverage=49.271; evalue=4.56e-28; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045087 | innate immune response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.811; coverage=49.271; evalue=4.56e-28; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045727 | positive regulation of translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045824 | negative regulation of innate immune response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.811; coverage=49.271; evalue=4.56e-28; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.811; coverage=49.271; evalue=4.56e-28; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050832 | defense response to fungus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.811; coverage=49.271; evalue=4.56e-28; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070934 | CRD-mediated mRNA stabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071346 | cellular response to type II interferon | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071395 | cellular response to jasmonic acid stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.811; coverage=49.271; evalue=4.56e-28; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090367 | negative regulation of mRNA modification | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140374 | antiviral innate immune response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.568; coverage=39.504; evalue=1.82e-16; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0141166 | chromosomal 5-methylcytosine DNA demethylation pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900152 | negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901194 | negative regulation of formation of translation preinitiation complex | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.378; coverage=58.601; evalue=3.92e-16; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905146 | lysosomal protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.568; coverage=39.504; evalue=1.82e-16; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905933 | regulation of cell fate determination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.811; coverage=49.271; evalue=4.56e-28; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000623 | negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000767 | positive regulation of cytoplasmic translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.811; coverage=49.271; evalue=4.56e-28; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.811; coverage=49.271; evalue=4.56e-28; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.811; coverage=49.271; evalue=4.56e-28; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005764 | lysosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.568; coverage=39.504; evalue=1.82e-16; UniProt GO evidence=IEA:GOC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.378; coverage=58.601; evalue=3.92e-16; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.378; coverage=58.601; evalue=3.92e-16; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070937 | CRD-mediated mRNA stability complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071013 | catalytic step 2 spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071204 | histone pre-mRNA 3'end processing complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097452 | GAIT complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0106002 | mCRD-mediated mRNA stability complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990904 | ribonucleoprotein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.811; coverage=49.271; evalue=4.56e-28; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.378; coverage=58.601; evalue=3.92e-16; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.811; coverage=49.271; evalue=4.56e-28; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003730 | mRNA 3'-UTR binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008143 | poly(A) binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043565 | sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.811; coverage=49.271; evalue=4.56e-28; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048027 | mRNA 5'-UTR binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G00830 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=27.811; coverage=49.271; evalue=4.56e-28 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dre:562991 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=26.568; coverage=39.504; evalue=1.82e-16 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:10492 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=24.378; coverage=58.601; evalue=3.92e-16 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:56403 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=24.378; coverage=58.601; evalue=3.24e-16 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:363113 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=25.641; coverage=39.796; evalue=5.06e-16 | UniProtKB/Swiss-Prot DAT 2026 current_release |